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[184592_at]

Description Y39A1A.22 /REP_DB=WormBase Gene ID /WP=CE19142 /TR=Q9XX10 /GB=CAA21031.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 9
(-2.4)
A 		27.5
(3)
A 		7
(-3)
A 		10.3
(-2)
A 		21
B 70.4
(3)
A 		8.2
(-2.6)
A 		7.7
(-2.6)
A 		3.7
(-3)
A 		67
C 13
(-1.9)
A 		17.2
(-1.4)
A 		3.7
(-3)
A 		54.2
(3)
A 		51
avr 30.8
(3) 		17.6
(-0.2) 		6.1
(-3) 		22.7
(1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 75.4
(3)
A 		69.5
(2.5)
A 		15.6
(-2)
A 		7.5
(-2.7)
A 		3.9
(-3)
A 		11.5
(-2.4)
A 		72
B 40.8
(3)
A 		25.6
(0.4)
A 		28.1
(0.8)
A 		28.1
(0.8)
A 		6.1
(-3)
A 		19.4
(-0.7)
A 		35
C 47
(1.6)
A 		59
(3)
A 		9.7
(-2.7)
A 		8.6
(-2.8)
A 		7.1
(-3)
A 		30.6
(-0.3)
A 		52
avr 54.4
(3) 		51.4
(2.6) 		17.8
(-1.5) 		14.7
(-1.9) 		5.7
(-3) 		20.5
(-1.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.3
(-0.6)
A 		6
(3)
A 		1.8
(-2.6)
A 		1.5
(-3)
A 		5
B 22.5
(3)
A 		2
(-2.7)
A 		1.8
(-2.7)
A 		0.8
(-3)
A 		22
C 4.3
(-0.7)
A 		4.9
(-0.2)
A 		1.3
(-3)
A 		9.1
(3)
A 		8
avr 10
(3) 		4.3
(-1.1) 		1.6
(-3) 		3.8
(-1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.9
(0.2)
A 		24.7
(3)
A 		3.4
(-2.4)
A 		1.9
(-2.8)
A 		1.2
(-3)
A 		2.8
(-2.6)
A 		24
B 14.2
(3)
A 		8.5
(0.1)
A 		6.8
(-0.8)
A 		7.4
(-0.5)
A 		2.5
(-3)
A 		7.2
(-0.6)
A 		12
C 17.4
(2.8)
A 		18
(3)
A 		2.5
(-2.7)
A 		1.7
(-3)
A 		2.3
(-2.8)
A 		10.2
(0.1)
A 		16
avr 15.2
(2.2) 		17.1
(3) 		4.2
(-2.1) 		3.7
(-2.3) 		2
(-3) 		6.7
(-1.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6771
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.22 NCBI
Target Description Y39A1A.22 /REP_DB=WormBase Gene ID /WP=CE19142 /TR=Q9XX10 /GB=CAA21031.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066958 NCBI Caenorhabditis elegans Y39A1A.22 (Y39A1A.22) mRNA, complete cds. 11/11 None
Y39A1A.22 ENSEMBL cdna:known chromosome:CEL140:III:10703686:10706417:-1 gene:Y39A1A.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10703681-10706413(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.22
Entrez Gene 3565273 Entrez gene
SwissProt Q9XX10 EMBL-EBI
WormBase CE19142 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262231_AT EXS family protein / ERD1/XPR1/SYG1 family protein at
DROSOPHILA_2:1630944_S_AT dm
DROSGENOME1:154547_AT dm
CHICKEN:GGAAFFX.26046.1.S1_AT similar to xenotropic and polytropic retrovirus receptor gga
CHICKEN:GGAAFFX.26048.1.S1_AT similar to xenotropic and polytropic retrovirus receptor gga
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21031 Hypothetical protein Y39A1A.22 [Caenorhabditis elegans] ref|NP_499359.1| Y39A1A.22 [Caenorhabditis elegans] 0.0
blast CAE71417 Hypothetical protein CBG18327 [Caenorhabditis briggsae] 0.0
blast EAA06862 ENSANGP00000019048 [Anopheles gambiae str. PEST] ref|XP_311179.2| ENSANGP00000019048 [Anopheles gambiae str. PEST] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR004331 EMBL-EBI SPX, N-terminal 3.7E-77
Pfam IPR004342 EMBL-EBI EXS, C-terminal 1.1E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499359.1 5 226-248,268-290,311-333,337-356,518-540
Y39A1A.22 5 226-248,268-290,311-333,337-356,518-540
Sequence
Target Sequence 
>C. ELEGANS:184592_AT
tacgaggctacggatcctaacaccacttcgatctttttctacatttggattctgtcctat
ataatgtcctttacctacaccttcctttgggatatcttcatggattggggattaatcgat
ccaagggctccaaaggaggcaagattcttgcgtgaagaaatgatctatggtagtaaatgg
tattactatatggctatcgctcaggattttgtgctccgattggcttgggtgctcaacgtc
tcgctcggagaagcttggactcttgactcggactttttgacgacagtaaccgcaccattc
gaagtgttccgtcggtttatctggaactatttccgacttgaaaatgagcatgtcaacaat
tgtggtcaattccgcgcggtgcgtgatatctcggtgaagccgattcgaaaaggagatttg
gagtcactgctatcgaaaatggatcaaatggatggggtcacgcatcgcggacaggatctc
atggagcgtgtcaagaagcagaagaagtcggcgaaggcctcaagacagcttcttcgtaag
aatcggttcaatcggatgattgccgctgctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGAGGCTACGGATCCTAACACCA 587 647 1534 Antisense
TAACACCACTTCGATCTTTTTCTAC 636 639 1551 Antisense
TTACCTACACCTTCCTTTGGGATAT 64 619 1604 Antisense
GGCTATCGCTCAGGATTTTGTGCTC 636 537 1725 Antisense
GACTCTTGACTCGGACTTTTTGACG 518 373 1791 Antisense
TGACGACAGTAACCGCACCATTCGA 5 569 1811 Antisense
GCACCATTCGAAGTGTTCCGTCGGT 4 315 1825 Antisense
AATTCCGCGCGGTGCGTGATATCTC 397 177 1901 Antisense
GTCACGCATCGCGGACAGGATCTCA 45 465 1990 Antisense
GAAGGCCTCAAGACAGCTTCTTCGT 549 333 2046 Antisense
CAATCGGATGATTGCCGCTGCTCCG 592 181 2082 Antisense
Sequence Source Affymetrix Proprietary Database