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[184591_at]

Description W08E12.8 /REP_DB=WormBase Gene ID /WP=CE24042 /TR=Q9N5B4 /GB=AAF39991.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 131
(-3)
A 		241.7
(1.9)
M 		266.7
(3)
P 		163.6
(-1.6)
A 		136
B 126.3
(-1.2)
P 		194.1
(2.4)
P 		204.7
(3)
P 		92.1
(-3)
A 		113
C 140.7
(-0.5)
P 		224.7
(3)
M 		205.2
(2.2)
P 		82
(-3)
A 		143
avr 132.7
(-1.9) 		220.2
(2.7) 		225.5
(3) 		112.6
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 75.1
(-3)
A 		298.2
(-1.7)
P 		540.5
(-0.2)
P 		1086.5
(3)
P 		802.5
(1.3)
P 		122.8
(-2.7)
P 		1011
B 110.2
(-3)
A 		276.8
(-2.1)
P 		386.9
(-1.5)
P 		1195.4
(3)
P 		869.4
(1.2)
P 		136.2
(-2.9)
P 		1085
C 92.8
(-3)
A 		263.2
(-2)
P 		514.1
(-0.5)
P 		1108.9
(3)
P 		716
(0.7)
P 		153.6
(-2.6)
P 		1016
avr 92.7
(-3) 		279.4
(-1.9) 		480.5
(-0.8) 		1130.3
(3) 		796
(1.1) 		137.5
(-2.7) 		1038
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 47.7
(0.1)
A 		52.5
(0.7)
M 		69.7
(3)
P 		24
(-3)
A 		46
B 40.3
(1.4)
P 		48
(3)
P 		47.4
(2.9)
P 		19.6
(-3)
A 		28
C 46.6
(0.4)
P 		64.6
(2.3)
M 		71.5
(3)
P 		13.8
(-3)
A 		58
avr 44.9
(0.5) 		55
(1.9) 		62.9
(3) 		19.1
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 13.9
(-3)
A 		106.1
(-0.9)
P 		117.7
(-0.6)
P 		275.5
(3)
P 		242.2
(2.2)
P 		29.9
(-2.6)
P 		262
B 38.4
(-3)
A 		92.1
(-2)
P 		93.9
(-1.9)
P 		316.6
(2.3)
P 		353.2
(3)
P 		50.8
(-2.8)
P 		315
C 34.4
(-3)
A 		80.3
(-1.6)
P 		130.8
(-0.1)
P 		223
(2.7)
P 		231.7
(3)
P 		51.4
(-2.5)
P 		197
avr 28.9
(-3) 		92.8
(-1.4) 		114.1
(-0.9) 		271.7
(2.9) 		275.7
(3) 		44
(-2.6) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10843
Sequence Type Exemplar sequence
Representative Public ID W08E12.8 NCBI
Target Description W08E12.8 /REP_DB=WormBase Gene ID /WP=CE24042 /TR=Q9N5B4 /GB=AAF39991.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067909 NCBI Caenorhabditis elegans W08E12.8 (W08E12.8) mRNA, complete cds. 11/11 None
SNAP00000023318 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3292367:3294467:1 11/11 None
GENEFINDER00000023333 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3289115:3294467:1 11/11 None
W08E12.8 ENSEMBL cdna:known chromosome:CEL140:IV:3292367:3294490:1 gene:W08E12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3292372-3294473(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.8
Entrez Gene 189295 Entrez gene
SwissProt Q9N5B4 EMBL-EBI
WormBase CE24042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39991 Hypothetical protein W08E12.8 [Caenorhabditis elegans] ref|NP_500310.1| W08E12.8 [Caenorhabditis elegans] 6.0E-43
blast AAF39991 Hypothetical protein W08E12.8 [Caenorhabditis elegans] ref|NP_500310.1| W08E12.8 [Caenorhabditis elegans] 3.0E-42
Sequence
Target Sequence 
>C. ELEGANS:184591_AT
tccgaaaggacgaactcatccccgttatcattgacatccatggtgagaagcgtaagatgt
ttgaagatatcgccgacacggtgttgagaagagttctcgatgaagaagaaaatgagtgtc
caccgattgagtcacgtggttccagcacatcatcattttcgacaacgccatcttcgtctg
cctcgccgctttccatcaaccaacttctcagttcttcgttctctcaaccgccggcacccc
aactgcctgtgccgctggcgttcaacccgttccagctagctctctatcagtctctagttg
cgaacaacactctcgcatttcccgtttttggcggtcccccgtcaatatttccgttgcttg
ttccgccgccgcagccccagccgactgttgagtcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAAAGGACGAACTCATCCCCGT 425 591 23 Antisense
TCATCCCCGTTATCATTGACATCCA 585 617 38 Antisense
GAAGATATCGCCGACACGGTGTTGA 39 339 85 Antisense
GAGTGTCCACCGATTGAGTCACGTG 473 401 136 Antisense
TGAGTCACGTGGTTCCAGCACATCA 634 567 150 Antisense
GTTCCAGCACATCATCATTTTCGAC 399 441 161 Antisense
TCATTTTCGACAACGCCATCTTCGT 500 619 175 Antisense
TCCATCAACCAACTTCTCAGTTCTT 294 591 214 Antisense
TAGCTCTCTATCAGTCTCTAGTTGC 597 651 299 Antisense
TGCGAACAACACTCTCGCATTTCCC 57 585 321 Antisense
AGCCCCAGCCGACTGTTGAGTCGAT 385 83 395 Antisense
Sequence Source Affymetrix Proprietary Database