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[184590_at]

Description C39D10.2 /REP_DB=WormBase Gene ID /WP=CE04181 /TR=Q18525 /GB=AAK39206.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 20      6grp_total > 03      4grp_total > 20      6grp_high1_sub > 02_03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 195
(-1.7)
P 		171
(-3)
P 		210.3
(-0.8)
P 		278.1
(3)
M 		107
B 177.2
(2.6)
P 		181.7
(3)
P 		158.8
(1.1)
P 		107.5
(-3)
P 		74
C 218.3
(-0.3)
P 		249
(0.7)
P 		129.4
(-3)
M 		325.3
(3)
P 		196
avr 196.8
(-0.4) 		200.6
(-0.1) 		166.2
(-3) 		237
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 177.1
(1)
M 		170.7
(0.7)
P 		124.7
(-1.5)
A 		138.6
(-0.8)
P 		219.1
(3)
P 		92.9
(-3)
P 		126
B 191.6
(3)
P 		168.4
(1.2)
P 		113.9
(-3)
M 		185.1
(2.5)
A 		140.5
(-0.9)
P 		143
(-0.8)
P 		78
C 127.3
(-2.5)
P 		265.4
(3)
P 		233
(1.7)
P 		226.1
(1.4)
P 		137.7
(-2.1)
M 		116.1
(-3)
A 		149
avr 165.3
(0.4) 		201.5
(3) 		157.2
(-0.2) 		183.3
(1.7) 		165.8
(0.5) 		117.3
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 71
(3)
P 		37.1
(-3)
P 		55
(0.2)
P 		40.7
(-2.4)
M 		34
B 56.5
(3)
P 		44.9
(0.9)
P 		36.8
(-0.5)
P 		22.9
(-3)
P 		34
C 72.3
(3)
P 		71.6
(2.8)
P 		45.1
(-3)
M 		54.9
(-0.8)
P 		27
avr 66.6
(3) 		51.2
(-0.4) 		45.6
(-1.6) 		39.5
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 32.6
(-1.6)
M 		60.7
(2.3)
P 		27.2
(-2.4)
A 		35.2
(-1.3)
P 		66.1
(3)
P 		22.6
(-3)
P 		44
B 66.7
(3)
P 		56.1
(1.4)
P 		27.7
(-3)
M 		49
(0.3)
A 		57.1
(1.5)
P 		53.3
(0.9)
P 		39
C 47.2
(-1.8)
P 		81
(3)
P 		59.3
(-0.1)
P 		45.5
(-2.1)
P 		44.5
(-2.2)
M 		38.9
(-3)
A 		42
avr 48.8
(-0.7) 		65.9
(3) 		38.1
(-3) 		43.2
(-1.9) 		55.9
(0.8) 		38.3
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16998
Sequence Type Exemplar sequence
Representative Public ID C39D10.2 NCBI
Target Description C39D10.2 /REP_DB=WormBase Gene ID /WP=CE04181 /TR=Q18525 /GB=AAK39206.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076929 NCBI Caenorhabditis elegans C39D10.2 (C39D10.2) mRNA, complete cds. 11/11 None
C39D10.2 ENSEMBL cdna:known chromosome:CEL140:X:7888656:7889585:1 gene:C39D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015635 4/11 Cross Hyb Matching Probes None
GENEFINDER00000015646 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7888654-7889562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39D10.2
Entrez Gene 183336 Entrez gene
SwissProt Q18525 EMBL-EBI
WormBase CE04181 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39206 Hypothetical protein C39D10.2 [Caenorhabditis elegans] ref|NP_509330.1| C39D10.2 [Caenorhabditis elegans] 1.0E-120
blast CAE70315 Hypothetical protein CBG16842 [Caenorhabditis briggsae] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509330.1 2 68-90,105-124
C39D10.2 2 68-90,105-124
Sequence
Target Sequence 
>C. ELEGANS:184590_AT
ccaactcgacaccatttatctctggaatgaacaaaaacaatgtcgaggcaggtgtaactt
ttgtgacgaaatgaggcgcaagccttccttgcttcgccccctagaatccatcaatatgcg
tcggttaccttacttcacctgttgccaaatccttgataaaggctctcaaattcattctta
caccattctttctttaacttttttcagaatttttaaatatttttttgtgtcttatttttc
gatttttttcaacgtgtttcatgggtggagcaacaaaaactgtcagatttcaggtaaagc
aagcgacatttcaatgttcggtctcaaggaaacaattttcttctctttggcagttttgtg
ctttgttgaggcggcgaaacggaatgctcaatgcgacctggtttgtcagagaaaaatgac
aatcgaatgttgcgaatgcatcgggtgtcatcagggaatgcgatttggaaaacgatcaca
gccattcagcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTCGACACCATTTATCTCTGG 573 275 18 Antisense
AAATGAGGCGCAAGCCTTCCTTGCT 15 121 86 Antisense
GCCCCCTAGAATCCATCAATATGCG 542 283 113 Antisense
ATATGCGTCGGTTACCTTACTTCAC 382 19 131 Antisense
TTCACCTGTTGCCAAATCCTTGATA 461 685 151 Antisense
AGGCTCTCAAATTCATTCTTACACC 545 53 177 Antisense
TTCTTACACCATTCTTTCTTTAACT 306 689 192 Antisense
AATTTTCTTCTCTTTGGCAGTTTTG 620 173 351 Antisense
ACGGAATGCTCAATGCGACCTGGTT 122 97 396 Antisense
GCGAATGCATCGGGTGTCATCAGGG 402 289 449 Antisense
AAACGATCACAGCCATTCAGCACTC 287 127 487 Antisense
Sequence Source Affymetrix Proprietary Database