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[184589_at]

Description Y9C9A.14 /REP_DB=WormBase Gene ID /WP=CE25648 /TR=Q9N2S3 /GB=AAF60939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 07      6grp_total > 52      4grp_total > 11      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 16.8
(-3)
A 		33.3
(-2)
A 		23.5
(-2.6)
A 		114.7
(3)
P 		98
B 65.8
(3)
P 		40.7
(-3)
A 		63.1
(2.4)
P 		65.5
(2.9)
P 		25
C 60.4
(-1)
P 		54.6
(-1.2)
P 		8.9
(-3)
A 		164.1
(3)
P 		155
avr 47.7
(-1.9) 		42.9
(-2.2) 		31.8
(-3) 		114.8
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 62.7
(-1.7)
A 		61.3
(-1.7)
P 		212
(3)
P 		69
(-1.5)
P 		53.2
(-2)
P 		20.2
(-3)
A 		192
B 40.6
(-2.1)
P 		87.9
(1)
P 		118.7
(3)
P 		50.1
(-1.5)
P 		46.1
(-1.7)
P 		26.5
(-3)
A 		92
C 45.8
(-2.7)
P 		146.9
(3)
P 		61.1
(-1.8)
P 		110.5
(1)
M 		48.3
(-2.5)
P 		39.7
(-3)
A 		107
avr 49.7
(-1.8) 		98.7
(1.1) 		130.6
(3) 		76.5
(-0.2) 		49.2
(-1.8) 		28.8
(-3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.1
(-3)
A 		7.2
(-2.4)
A 		6.1
(-3)
A 		16.8
(3)
P 		11
B 21
(3)
P 		10.1
(-3)
A 		14.6
(-0.5)
P 		13.9
(-0.9)
P 		11
C 20
(1.1)
P 		15.7
(0.1)
P 		3.1
(-3)
A 		27.7
(3)
P 		25
avr 15.7
(1) 		11
(-1.4) 		7.9
(-3) 		19.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11.6
(-2)
A 		21.8
(-0.5)
P 		46.2
(3)
P 		17.5
(-1.2)
P 		16
(-1.4)
P 		4.9
(-3)
A 		41
B 14.1
(-1.7)
P 		29.3
(3)
P 		28.8
(2.8)
P 		13.3
(-1.9)
P 		18.7
(-0.3)
P 		9.9
(-3)
A 		19
C 17
(-2.3)
P 		44.8
(3)
P 		15.6
(-2.6)
P 		22.2
(-1.3)
M 		15.6
(-2.6)
P 		13.3
(-3)
A 		32
avr 14.2
(-1.7) 		32
(3) 		30.2
(2.5) 		17.7
(-0.8) 		16.8
(-1) 		9.4
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10854
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.14 NCBI
Target Description Y9C9A.14 /REP_DB=WormBase Gene ID /WP=CE25648 /TR=Q9N2S3 /GB=AAF60939.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y9C9A.14 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:4969830:4971135:-1 gene:Y9C9A.14 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4969835-4970922(-) 96.68 100.0
Public Domain and Genome References
Ensembl Y9C9A.14
Sequence
Target Sequence 
>C. ELEGANS:184589_AT
gtgtccacacaatttcagttgccaaattgtttcgaggctgtcgcatttattttctttact
gtttcgttcgatgcttatatttatttttttattttatttttatcttctttgtcatatatc
cacttcttgataaaaatcagaaaatttaattatctacaatcggttaagcagaacaaccca
caaacatatattctaatgcaaactatcattgttttcattttcaaatctgtgagtttcatt
tttgaatccccgggaaaaaatgttactaatgatatcatttctaggtctgcattctgcatt
ctatcattgttggcatcttcaatcaacaaattctacctgctttatgaaactgtgcttgtt
atcacatctgacattattgtcatcccattgatcattcagatttcctatttatgctgtaat
aaacagaatatgactactttattcgcttcattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCCACACAATTTCAGTTGCCAA 687 485 382 Antisense
GAGGCTGTCGCATTTATTTTCTTTA 707 405 415 Antisense
TTTCTTTACTGTTTCGTTCGATGCT 94 673 432 Antisense
ATCTTCTTTGTCATATATCCACTTC 630 31 483 Antisense
GTGAGTTTCATTTTTGAATCCCCGG 464 483 610 Antisense
ATCATTTCTAGGTCTGCATTCTGCA 206 31 655 Antisense
GCATTCTGCATTCTATCATTGTTGG 677 307 670 Antisense
ATCAACAAATTCTACCTGCTTTATG 508 27 703 Antisense
GTGCTTGTTATCACATCTGACATTA 693 479 733 Antisense
GTCATCCCATTGATCATTCAGATTT 539 467 760 Antisense
GACTACTTTATTCGCTTCATTTTCA 629 373 813 Antisense
Sequence Source Affymetrix Proprietary Database