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[184588_at]

Description Y57A10B.6 /REP_DB=WormBase Gene ID /WP=CE20327 /TR=Q9XWH5 /GB=CAA21693.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 65.5
(-3)
A 		103.2
(-0.9)
A 		106.7
(-0.7)
P 		171.1
(3)
P 		106
B 69.8
(0.8)
A 		89
(3)
A 		56.7
(-0.7)
A 		36.9
(-3)
A 		52
C 48.5
(-3)
A 		82.4
(-0.2)
A 		75.1
(-0.8)
A 		120.7
(3)
P 		72
avr 61.3
(-3) 		91.5
(0.8) 		79.5
(-0.7) 		109.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 104
(3)
A 		83.6
(1.2)
A 		39.7
(-2.5)
A 		53.5
(-1.3)
A 		34.3
(-3)
A 		98.8
(2.6)
A 		70
B 93.4
(3)
A 		76.4
(1.6)
M 		18.3
(-3)
A 		71.2
(1.2)
A 		55.5
(-0)
A 		82.3
(2.1)
M 		75
C 59.7
(-1)
A 		67.2
(0.9)
A 		75.8
(3)
A 		60.4
(-0.8)
A 		51.5
(-3)
A 		64.6
(0.2)
A 		24
avr 85.7
(3) 		75.7
(1.5) 		44.6
(-3) 		61.7
(-0.5) 		47.1
(-2.6) 		81.9
(2.4) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 23.8
(-1.5)
A 		22.4
(-3)
A 		27.9
(3)
P 		25
(-0.2)
P 		6
B 22.2
(3)
A 		22
(2.9)
A 		13.1
(-0.8)
A 		7.9
(-3)
A 		14
C 16.1
(-3)
A 		23.7
(1.5)
A 		26.2
(3)
A 		20.3
(-0.5)
P 		10
avr 20.7
(0.6) 		22.7
(3) 		22.4
(2.6) 		17.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 19.2
(0)
A 		29.7
(3)
A 		8.6
(-3)
A 		13.6
(-1.6)
A 		10.3
(-2.5)
A 		24.1
(1.4)
A 		21
B 32.5
(3)
A 		25.4
(1.5)
M 		4.4
(-3)
A 		18.9
(0.1)
A 		22.5
(0.9)
A 		30.7
(2.6)
M 		28
C 22.1
(3)
A 		20.5
(2)
A 		19.3
(1.3)
A 		12.1
(-3)
A 		16.7
(-0.2)
A 		21.6
(2.7)
A 		10
avr 24.6
(2.6) 		25.2
(2.9) 		10.8
(-3) 		14.9
(-1.3) 		16.5
(-0.7) 		25.5
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3275
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.6 NCBI
Target Description Y57A10B.6 /REP_DB=WormBase Gene ID /WP=CE20327 /TR=Q9XWH5 /GB=CAA21693.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064228 NCBI Caenorhabditis elegans Y57A10B.6 (Y57A10B.6) mRNA, complete cds. 11/11 None
SNAP00000034317 ENSEMBL cdna:SNAP chromosome:CEL140:II:12390059:12392480:1 11/11 None
GENEFINDER00000034322 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12390059:12392480:1 11/11 None
Y57A10B.6 ENSEMBL cdna:known chromosome:CEL140:II:12390048:12392480:1 gene:Y57A10B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12390055-12392477(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10B.6
Entrez Gene 174878 Entrez gene
SwissProt Q9XWH5 EMBL-EBI
WormBase CE20327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21693 Hypothetical protein Y57A10B.6 [Caenorhabditis elegans] ref|NP_496629.1| Y57A10B.6 [Caenorhabditis elegans] 0.0
blast CAB60371 Hypothetical protein Y46G5A.28 [Caenorhabditis elegans] ref|NP_496733.1| Y46G5A.28 [Caenorhabditis elegans] 4.0E-36
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184588_AT
gaaggtatccacctatacacggagattttacacataataggatggaaatcgagatgatat
ttttggctcagtgcattaaagcaggaaatgaggaaatgatatccaccgccatagaatttg
tcggtacagacgagctgccgctggaattctaccgaaaatacgacattgctctttcgtgtc
acctctactgcccagaacaggaagattgcaagcacctgatcgactttatcgaagagatgg
aagaagtcggtatgcaatgggagaatttggaagctctggaaagatacttacgcgagaact
cggagctcgggcttgtgcccgatagtgtgatgacgcttttgatgggatatttcaaaggtg
ataggtacttgggtgatgaggattggaaggactattttgtcgacccaatttgcaacttct
tcctgtcacaggacgtctcgctggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTATCCACCTATACACGGAGA 189 335 572 Antisense
GATATCCACCGCCATAGAATTTGTC 563 425 669 Antisense
TTGTCGGTACAGACGAGCTGCCGCT 697 705 689 Antisense
CTGCCGCTGGAATTCTACCGAAAAT 153 233 706 Antisense
TACGACATTGCTCTTTCGTGTCACC 108 649 730 Antisense
TCACCTCTACTGCCCAGAACAGGAA 337 625 750 Antisense
GATTGCAAGCACCTGATCGACTTTA 250 431 775 Antisense
ACGCGAGAACTCGGAGCTCGGGCTT 498 91 861 Antisense
GGCTTGTGCCCGATAGTGTGATGAC 15 537 881 Antisense
TTGTCGACCCAATTTGCAACTTCTT 86 701 968 Antisense
TGTCACAGGACGTCTCGCTGGATCA 338 559 995 Antisense
Sequence Source Affymetrix Proprietary Database