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[184586_s_at]

Description T09B4.10 /REP_DB=WormBase Gene ID /WP=CE13475 /TR=O02162 /GB=AAB53012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 63      6grp_total > 74      4grp_total > 13      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 462.1
(-0.4)
P 		304.9
(-3)
P 		324.3
(-2.7)
P 		664
(3)
P 		359
B 456.1
(0.1)
P 		405
(-0.9)
P 		295.5
(-3)
P 		609.2
(3)
P 		314
C 436.6
(-0.2)
P 		355.2
(-3)
P 		385.3
(-2)
P 		528.7
(3)
P 		174
avr 451.6
(-0.4) 		355
(-2.5) 		335
(-3) 		600.6
(3) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 388.6
(-2.8)
P 		379.2
(-3)
P 		570.7
(1.6)
P 		627.2
(3)
P 		512
(0.2)
P 		591.4
(2.1)
P 		248
B 429.8
(-2.1)
P 		396.5
(-3)
P 		568
(1.4)
P 		581
(1.7)
P 		630.6
(3)
P 		610.2
(2.5)
P 		234
C 445.1
(-3)
P 		449.5
(-2.9)
P 		577.5
(-1.3)
P 		904.9
(3)
P 		544.4
(-1.7)
P 		681
(0.1)
P 		460
avr 421.2
(-2.7) 		408.4
(-3) 		572.1
(0.3) 		704.4
(3) 		562.3
(0.1) 		627.5
(1.4) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 168.2
(3)
P 		66.2
(-3)
P 		84.8
(-1.9)
P 		97.2
(-1.2)
P 		102
B 145.5
(3)
P 		100
(-0.5)
P 		68.5
(-3)
P 		129.8
(1.8)
P 		77
C 144.5
(3)
P 		102.1
(-1.6)
P 		134.3
(1.9)
P 		89.1
(-3)
P 		55
avr 152.7
(3) 		89.4
(-3) 		95.9
(-2.4) 		105.4
(-1.5) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 71.6
(-3)
P 		134.9
(1.3)
P 		124.3
(0.6)
P 		159.1
(3)
P 		154.5
(2.7)
P 		144
(2)
P 		88
B 149.5
(-2.2)
P 		132
(-3)
P 		137.9
(-2.7)
P 		153.9
(-1.9)
P 		256.2
(3)
P 		227.5
(1.6)
P 		124
C 165
(-1.2)
P 		137.1
(-3)
P 		147
(-2.3)
P 		182
(-0)
P 		176.2
(-0.4)
P 		228
(3)
P 		91
avr 128.7
(-3) 		134.7
(-2.5) 		136.4
(-2.4) 		165
(0.1) 		195.6
(2.6) 		199.8
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184586_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.533
Sequence Type Exemplar sequence
Representative Public ID T09B4.10 NCBI
Target Description T09B4.10 /REP_DB=WormBase Gene ID /WP=CE13475 /TR=O02162 /GB=AAB53012.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059380 NCBI Caenorhabditis elegans C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) (chn-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000036051 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6189771:6191981:-1 11/11 None
SNAP00000036042 ENSEMBL cdna:SNAP chromosome:CEL140:I:6190772:6191981:-1 11/11 None
T09B4.10.1 ENSEMBL cdna:known chromosome:CEL140:I:6189451:6191991:-1 gene:T09B4.10 11/11 None
T09B4.10.2 ENSEMBL cdna:known chromosome:CEL140:I:6189451:6192015:-1 gene:T09B4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6189699-6191910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol chn-1
Ensembl T09B4.10
Entrez Gene 172303 Entrez gene
SwissProt Q9BMU2 EMBL-EBI
WormBase CE29991 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259019_AT tetratricopeptide repeat (TPR)-containing protein / U-box domain-containing protein at
CANINE:1583182_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFA.12154.1.A1_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFA.14571.1.S1_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFAAFFX.30010.1.S1_S_AT similar to STIP1 homology and U-box containing protein 1 cfa
DROSOPHILA_2:1623826_AT dm
DROSGENOME1:144169_AT dm
CHICKEN:GGA.6217.2.S1_S_AT STIP1 homology and U-box containing protein 1 gga
CHICKEN:GGAAFFX.13102.1.S1_S_AT STIP1 homology and U-box containing protein 1 gga
HG-U133_PLUS_2:233049_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133B:233049_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133A:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133_PLUS_2:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-FOCUS:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133A_2:217934_X_AT STIP1 homology and U-box containing protein 1 hs
U133_X3P:HS.25197.1.S1_3P_A_AT STIP1 homology and U-box containing protein 1 hs
HG-U133_PLUS_2:227625_S_AT STIP1 homology and U-box containing protein 1 hs
HG-U133B:227625_S_AT STIP1 homology and U-box containing protein 1 hs
HG-U95C:65827_AT STIP1 homology and U-box containing protein 1 hs
HG-U95E:87929_I_AT STIP1 homology and U-box containing protein 1 hs
HG-U95E:87930_R_AT STIP1 homology and U-box containing protein 1 hs
HG-U95C:63284_AT STIP1 homology and U-box containing protein 1 hs
MG-U74AV2:160318_AT STIP1 homology and U-Box containing protein 1 mm
MG-U74BV2:164951_F_AT STIP1 homology and U-Box containing protein 1 mm
MG-U74CV2:165813_AT STIP1 homology and U-Box containing protein 1 mm
MOE430A:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430A_2:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOE430A:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430A_2:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOE430B:1429069_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1429069_AT STIP1 homology and U-Box containing protein 1 mm
RG-U34B:RC_AA849721_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RAE230A:1398910_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RAT230_2:1398910_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB53012 C-term of hsp70-interacting protein (chip family) protein 1 [Caenorhabditis elegans] ref|NP_491781.2| C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) [Caenorhabditis elegans] gb|AAG50227.1| Hsp70-interacting protein [Caenorhabditis elegans] 1.0E-153
blast AAB53012 C-term of hsp70-interacting protein (chip family) protein 1 [Caenorhabditis elegans] ref|NP_491781.2| C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) [Caenorhabditis elegans] gb|AAG50227.1| Hsp70-interacting protein [Caenorhabditis elegans] 1.0E-151
blast AAB53012 C-term of hsp70-interacting protein (chip family) protein 1 [Caenorhabditis elegans] ref|NP_491781.2| C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) [Caenorhabditis elegans] gb|AAG50227.1| Hsp70-interacting protein [Caenorhabditis elegans] 1.0E-140
blast CAE67129 Hypothetical protein CBG12551 [Caenorhabditis briggsae] 1.0E-136
blast CAE67129 Hypothetical protein CBG12551 [Caenorhabditis briggsae] 1.0E-134
blast CAE67129 Hypothetical protein CBG12551 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.4E-5
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-9
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-5
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 5.1E-56
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 1.5E-50
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 9.0E-47
Sequence
Target Sequence 
>C. ELEGANS:184586_S_AT
gcactggaactgagcccaaacgaagtgaaacctttatacttcttgggaaatgtatttcta
cagagcaaaaagtacagtgaagcaataagctgtctctccaaagcgctctaccataatgct
gttatcacgaacgctccagatattgagaacgccctcaaacgggcacgccatcaaaagtac
gaggaggaggagtcaaagcgaattgtacaagacgttgaatttcacacgtatttggagagc
ttgatcgaaaaggatcgtcaagaaaattctgaaaacccagaggagttgcaaagagcagat
atggctaaaaaacgtctaaccgaactcactttagcgacacaagaaaaacggcaaaacagg
gaggttcctgagatgctctgcggcaaaattacactggaactgatgaaagagccggtgata
gttccatctggaatcacgtatgaccgagaagaaattgtgcagcatttgagaagaattggc
catttcgatccagtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGGAACTGAGCCCAAACGAAG 33 315 202 Antisense
CAATAAGCTGTCTCTCCAAAGCGCT 396 179 284 Antisense
AAAGCGCTCTACCATAATGCTGTTA 360 125 301 Antisense
AATGCTGTTATCACGAACGCTCCAG 269 167 316 Antisense
TGAGAACGCCCTCAAACGGGCACGC 654 567 345 Antisense
ACGGGCACGCCATCAAAAGTACGAG 473 95 360 Antisense
GTCTAACCGAACTCACTTTAGCGAC 186 375 515 Antisense
GTTCCTGAGATGCTCTGCGGCAAAA 678 439 565 Antisense
AAGAGCCGGTGATAGTTCCATCTGG 644 151 608 Antisense
GTTCCATCTGGAATCACGTATGACC 6 441 622 Antisense
GAATTGGCCATTTCGATCCAGTCAC 229 323 674 Antisense
Sequence Source Affymetrix Proprietary Database