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[184585_at]

Description Y46G5A.23 /REP_DB=WormBase Gene ID /WP=CE21968 /TR=Q9U2E5 /GB=CAB60366.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.2
(-3)
A 		28
(1.3)
A 		3.4
(-2.8)
A 		38.5
(3)
A 		36
B 12.5
(-3)
A 		23.8
(0.5)
A 		31.9
(3)
A 		16.9
(-1.6)
A 		19
C 24.9
(1.6)
A 		29.6
(3)
A 		8.9
(-3)
A 		24.1
(1.4)
A 		21
avr 13.2
(-3) 		27.1
(3) 		14.7
(-2.4) 		26.5
(2.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.8
(-2.9)
A 		2.4
(-3)
A 		25.3
(1.3)
A 		30.4
(2.2)
A 		9
(-1.8)
A 		34.5
(3)
A 		32
B 15.6
(3)
A 		1.5
(-3)
A 		5.8
(-1.2)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		15.2
(2.8)
A 		14
C 6.8
(-1.7)
A 		5.6
(-2)
A 		3.6
(-2.7)
A 		19.3
(2.2)
A 		2.5
(-3)
A 		21.9
(3)
A 		19
avr 8.4
(-1.5) 		3.2
(-3) 		11.6
(-0.6) 		17.2
(1.1) 		4.4
(-2.7) 		23.9
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-3)
A 		6.1
(3)
A 		0.9
(-2.9)
A 		5.6
(2.4)
A 		5
B 4
(-2.4)
A 		5.9
(0.6)
A 		7.4
(3)
A 		3.6
(-3)
A 		4
C 8.2
(2.7)
A 		8.5
(3)
A 		3.1
(-3)
A 		4.1
(-1.9)
A 		5
avr 4.3
(-2) 		6.8
(3) 		3.8
(-3) 		4.4
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-2.8)
A 		5.5
(0.8)
A 		7.7
(2.5)
A 		2.7
(-1.3)
A 		8.4
(3)
A 		8
B 5.4
(2.7)
A 		0.5
(-3)
A 		1.4
(-2)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		5.7
(3)
A 		5
C 2.5
(-1.4)
A 		1.7
(-2.2)
A 		0.9
(-2.9)
A 		3.9
(-0.1)
A 		0.8
(-3)
A 		7.3
(3)
A 		7
avr 2.8
(-1.2) 		1
(-3) 		2.6
(-1.4) 		4
(-0) 		1.4
(-2.6) 		7.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3475
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.23 NCBI
Target Description Y46G5A.23 /REP_DB=WormBase Gene ID /WP=CE21968 /TR=Q9U2E5 /GB=CAB60366.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064327 NCBI Caenorhabditis elegans Y46G5A.23 (Y46G5A.23) mRNA, complete cds. 11/11 None
SNAP00000039003 ENSEMBL cdna:SNAP chromosome:CEL140:II:12825443:12828860:-1 11/11 None
GENEFINDER00000039018 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12828487:12828860:-1 11/11 None
Y46G5A.23 ENSEMBL cdna:known chromosome:CEL140:II:12828450:12828860:-1 gene:Y46G5A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12828483-12828857(-) 66.36 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.23
Entrez Gene 174918 Entrez gene
SwissProt Q9U2E5 EMBL-EBI
WormBase CE21968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI70403 Hypothetical protein BE10.5 [Caenorhabditis elegans] ref|NP_001021137.1| BE10.5 [Caenorhabditis elegans] 5.0E-17
blast CAE69533 Hypothetical protein CBG15742 [Caenorhabditis briggsae] 1.0E-15
blast CAB60366 Hypothetical protein Y46G5A.23 [Caenorhabditis elegans] ref|NP_496728.1| Y46G5A.23 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184585_AT
tgttttcgattttcctggtggccatcgtcagcagtagtatcacatttgatcattctgaag
actgcgacgatgatgattatggaaatgatggtggtattgtgcttggtggtggtggtggag
gagattcttgcgaagacggaggtgagcaacaagtcgtgctgatcggccaagttttgggtg
gcggcggtggtggtggaggtcgccgtcatcacagaggtcatcgtcatggaggtggaggac
acagacatggtggtcatcgaggtggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTCGATTTTCCTGGTGGCCAT 559 561 29 Antisense
GGCCATCGTCAGCAGTAGTATCACA 234 543 48 Antisense
GATCATTCTGAAGACTGCGACGATG 179 419 76 Antisense
GATGGTGGTATTGTGCTTGGTGGTG 661 407 115 Antisense
GGTGGAGGAGATTCTTGCGAAGACG 114 499 142 Antisense
GCAACAAGTCGTGCTGATCGGCCAA 273 319 174 Antisense
GATCGGCCAAGTTTTGGGTGGCGGC 673 417 189 Antisense
CCGTCATCACAGAGGTCATCGTCAT 123 265 231 Antisense
GAGGTCATCGTCATGGAGGTGGAGG 48 403 242 Antisense
GGTGGAGGACACAGACATGGTGGTC 266 499 259 Antisense
GACATGGTGGTCATCGAGGTGGTGG 504 369 272 Antisense
Sequence Source Affymetrix Proprietary Database