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[184584_at]

Description C13A10.1 /REP_DB=WormBase Gene ID /WP=CE08123 /TR=P91044 /GB=AAB37939.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 108.3
(0.6)
A 		129.1
(3)
A 		76.3
(-3)
A 		107.7
(0.6)
P 		53
B 55.3
(-3)
P 		55.4
(-3)
A 		66
(-1.7)
A 		104.4
(3)
A 		49
C 73.1
(-1.3)
P 		79
(-0.7)
A 		57.8
(-3)
A 		112.2
(3)
P 		54
avr 78.9
(-1.2) 		87.8
(0.1) 		66.7
(-3) 		108.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 39.4
(-3)
A 		57.8
(-1.3)
P 		73.3
(0.2)
A 		45.1
(-2.5)
A 		44.6
(-2.5)
A 		103.6
(3)
P 		64
B 53.9
(-1.6)
A 		60.9
(-0.8)
A 		93.3
(3)
P 		76.9
(1.1)
A 		42.3
(-3)
A 		59.9
(-0.9)
A 		51
C 81.9
(2.3)
A 		89.7
(3)
A 		71.2
(1.3)
A 		72.4
(1.4)
A 		22.9
(-3)
A 		88.7
(2.9)
A 		67
avr 58.4
(-0.2) 		69.5
(1.2) 		79.3
(2.4) 		64.8
(0.6) 		36.6
(-3) 		84.1
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 39.4
(3)
A 		28
(0.1)
A 		19.9
(-2)
A 		15.8
(-3)
P 		24
B 17.6
(-0.2)
P 		13.7
(-3)
A 		15.3
(-1.9)
A 		22.2
(3)
A 		9
C 24.2
(3)
P 		22.7
(1.3)
A 		20.2
(-1.5)
A 		18.9
(-3)
P 		5
avr 27.1
(3) 		21.5
(-0.9) 		18.5
(-3) 		19
(-2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.3
(-3)
A 		20.6
(1.5)
P 		16
(-0.1)
A 		11.4
(-1.6)
A 		13.5
(-0.9)
A 		25.2
(3)
P 		18
B 18.8
(-1.2)
A 		20.3
(0.4)
A 		22.6
(3)
P 		20.4
(0.6)
A 		17.2
(-3)
A 		22.3
(2.7)
A 		5
C 30.3
(3)
A 		27.4
(2.2)
A 		18.1
(-0.2)
A 		14.6
(-1.1)
A 		7.4
(-3)
A 		29.7
(2.8)
A 		23
avr 18.8
(-0.2) 		22.8
(1.7) 		18.9
(-0.1) 		15.5
(-1.7) 		12.7
(-3) 		25.7
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4335
Sequence Type Exemplar sequence
Representative Public ID C13A10.1 NCBI
Target Description C13A10.1 /REP_DB=WormBase Gene ID /WP=CE08123 /TR=P91044 /GB=AAB37939.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061553 NCBI Caenorhabditis elegans C13A10.1 (C13A10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000024151 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1350781:1355496:-1 11/11 None
C13A10.1 ENSEMBL cdna:known chromosome:CEL140:II:1350726:1355644:-1 gene:C13A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1350779-1355495(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A10.1
Entrez Gene 173514 Entrez gene
SwissProt P91044 EMBL-EBI
WormBase CE08123 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37939 Hypothetical protein C13A10.1 [Caenorhabditis elegans] ref|NP_493954.1| C13A10.1 [Caenorhabditis elegans] 0.0
blast CAE62959 Hypothetical protein CBG07173 [Caenorhabditis briggsae] 1.0E-139
blast CAE62959 Hypothetical protein CBG07173 [Caenorhabditis briggsae] 8.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493954.1 1 91-113
C13A10.1 1 91-113
GENEFINDER00000024151 1 91-113
Sequence
Target Sequence 
>C. ELEGANS:184584_AT
tcaggttcttggggaccgggtactgtacctgatgacgtggcagaacaccacgtgtacact
acaaactacaattttcaatggaactgacggaaatgttcagttgggagagacgcagagttg
tccgaatacggtagcaccgaattggctgaaaaatccaattttgaacctgatgacgtcatc
ggaatttttgacagaggattacggtagtggaccctcctggcggctggatacggtagttag
tactcatggaaatttggtactttatgatcgatatggaaacctgacaaatgtgatctacta
tggaatgaatgttaatgcgacgcaggagccgtttaaggtaatttccactcgaatcgatga
ctccgtatctcaccatatggtagccgtaatctacccgacacgtatctacgtgacacgtca
gcaccttgtctccggttgtgttacagtactctctaccccgggatacgtggaatatcggct
cagtgggaagtttgggggcggagcttggactggtgatgatttgatgatatggtaccagga
tatgggcggagcctatgttgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGTTCTTGGGGACCGGGTACTG 657 567 828 Antisense
AGGATTACGGTAGTGGACCCTCCTG 466 57 1022 Antisense
CTCCTGGCGGCTGGATACGGTAGTT 172 235 1041 Antisense
TTTCCACTCGAATCGATGACTCCGT 89 665 1169 Antisense
TGACTCCGTATCTCACCATATGGTA 344 569 1185 Antisense
AATCTACCCGACACGTATCTACGTG 51 149 1215 Antisense
ACCTTGTCTCCGGTTGTGTTACAGT 698 83 1250 Antisense
TACTCTCTACCCCGGGATACGTGGA 679 641 1274 Antisense
GGCTCAGTGGGAAGTTTGGGGGCGG 195 535 1304 Antisense
GGCGGAGCTTGGACTGGTGATGATT 283 541 1324 Antisense
ATATGGGCGGAGCCTATGTTGCCAC 545 21 1367 Antisense
Sequence Source Affymetrix Proprietary Database