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[184583_at] 7TM chemoreceptor, srx family

Description T05A12.1 /REP_DB=WormBase Gene ID /WP=CE04896 /TR=Q9GYL0 /GB=AAF98589.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 20      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 37.4
(1)
A 		54.6
(3)
A 		2.8
(-3)
A 		51.5
(2.6)
A 		52
B 26.6
(-1.5)
P 		37.4
(-0.5)
A 		9
(-3)
A 		78.2
(3)
P 		69
C 25.8
(-2.3)
A 		37.5
(-1.6)
A 		12.6
(-3)
A 		120.8
(3)
P 		108
avr 29.9
(-1.3) 		43.2
(-0.2) 		8.1
(-3) 		83.5
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 61.1
(3)
A 		41
(0.9)
A 		37
(0.5)
P 		2.8
(-3)
A 		32.1
(0)
A 		37.8
(0.6)
M 		58
B 34.7
(-1.6)
M 		55.1
(3)
A 		47.1
(1.2)
A 		33.9
(-1.8)
A 		31.1
(-2.4)
A 		28.4
(-3)
A 		27
C 12.1
(-1.9)
A 		56.2
(3)
P 		21.1
(-0.9)
A 		37.3
(0.9)
A 		1.9
(-3)
A 		47
(2)
A 		54
avr 36
(-0.1) 		50.8
(3) 		35.1
(-0.2) 		24.7
(-2.4) 		21.7
(-3) 		37.7
(0.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.6
(3)
A 		11.8
(2.2)
A 		0.7
(-3)
A 		7.5
(0.2)
A 		13
B 8.5
(-0.4)
P 		9.2
(-0.1)
A 		2.1
(-3)
A 		16.7
(3)
P 		15
C 8.5
(-1.5)
A 		10.8
(-0.6)
A 		4.4
(-3)
A 		20.4
(3)
P 		16
avr 10.2
(0.7) 		10.6
(0.9) 		2.4
(-3) 		14.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.3
(1.6)
A 		14.6
(3)
A 		8.1
(0.2)
P 		0.7
(-3)
A 		9.7
(0.9)
A 		9.2
(0.7)
M 		14
B 12.1
(-1)
M 		18.3
(3)
A 		11.4
(-1.5)
A 		9
(-3)
A 		12.6
(-0.7)
A 		10.6
(-2)
A 		9
C 4.5
(-1.6)
A 		17.2
(3)
P 		5.4
(-1.3)
A 		7.5
(-0.5)
A 		0.6
(-3)
A 		15.7
(2.5)
A 		17
avr 9.3
(-1) 		16.7
(3) 		8.3
(-1.6) 		5.7
(-3) 		7.6
(-2) 		11.8
(0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8380
Sequence Type Exemplar sequence
Representative Public ID T05A12.1 NCBI
Target Description T05A12.1 /REP_DB=WormBase Gene ID /WP=CE04896 /TR=Q9GYL0 /GB=AAF98589.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068656 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-19) (srx-19) mRNA, complete cds. 11/11 None
GENEFINDER00000001134 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6873309:6874790:1 10/11 None
T05A12.1 ENSEMBL cdna:known chromosome:CEL140:IV:6873309:6874758:1 gene:T05A12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001127 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6872722-6874796(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-19
Ensembl T05A12.1
Entrez Gene 188098 Entrez gene
SwissProt Q9GYL0 EMBL-EBI
WormBase CE36563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98589 Serpentine receptor, class x protein 19 [Caenorhabditis elegans] ref|NP_501057.2| Serpentine Receptor, class X family member (srx-19) [Caenorhabditis elegans] 1.0E-176
blast AAF98589 Serpentine receptor, class x protein 19 [Caenorhabditis elegans] ref|NP_501057.2| Serpentine Receptor, class X family member (srx-19) [Caenorhabditis elegans] 1.0E-150
blast CAE61753 Hypothetical protein CBG05708 [Caenorhabditis briggsae] 1.0E-117
blast CAE61753 Hypothetical protein CBG05708 [Caenorhabditis briggsae] 1.0E-116
blast CAE61752 Hypothetical protein CBG05707 [Caenorhabditis briggsae] 1.0E-106
blast AAB03178 Serpentine receptor, class x protein 20 [Caenorhabditis elegans] ref|NP_501056.2| Serpentine Receptor, class X family member (srx-20) [Caenorhabditis elegans] 4.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501057.2 7 5-27,48-70,85-107,127-149,169-191,219-241,251-273
T05A12.1 7 5-27,48-70,85-107,127-149,169-191,219-241,251-273
GENEFINDER00000001134 7 5-27,48-70,85-107,127-149,169-191,221-243,258-280
Sequence
Target Sequence 
>C. ELEGANS:184583_AT
ttctatgaatttctcggctgctacctttactttgaacaagaatcttggctgttctcgtac
ccggagaatgatgttcgttgtgatcaactcacttggtattgtgatttcattttcaacatg
tccctggttgttgccacactgtttttgaatttgttggcagcatataaagccagaaaactt
catcgaatagtgtcagatagtactggagttggaatgtcaaaggatcaacgacaaagagaa
tttaacttcattcgacaatcattctttcaaggtttatcgatgagtgttgcgttgattttt
tatcggattactgcaccaatgctcgaaaaccaaatattactgtttctggatgcaaatttg
tgggctttcatgttggcttttgaagggttagttcagattttttcacaatttttacgaaca
tttataggtgggaggcctaggtataatcttattgtccaaccaggaaatgatgcaagccgt
caagaaaaagaggcacggtcagtcgggttctatagtcaaatcaattatcgatttatattt
ttcagaactaatatcgtcagtcttcgtactggacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTATGAATTTCTCGGCTGCTACC 330 689 760 Antisense
GGCTGCTACCTTTACTTTGAACAAG 578 535 775 Antisense
CAAGAATCTTGGCTGTTCTCGTACC 373 185 796 Antisense
GTTCGTTGTGATCAACTCACTTGGT 614 441 832 Antisense
GATTTCATTTTCAACATGTCCCTGG 147 429 862 Antisense
GGTTGTTGCCACACTGTTTTTGAAT 179 507 885 Antisense
AACTTCATTCGACAATCATTCTTTC 388 139 1003 Antisense
ATCGGATTACTGCACCAATGCTCGA 121 35 1061 Antisense
TTGTGGGCTTTCATGTTGGCTTTTG 575 703 1117 Antisense
GCACGGTCAGTCGGGTTCTATAGTC 673 309 1252 Antisense
ATCGTCAGTCTTCGTACTGGACATC 405 35 1312 Antisense
Sequence Source Affymetrix Proprietary Database