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[184582_s_at]

Description F57B9.10 /REP_DB=WormBase Gene ID /WP=CE25011 /TR=Q20938 /GB=AAA21173.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 68      6grp_total > 95      4grp_total > 24      6grp_cgc > 78      6grp_high1_sub > 04      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 883
1 2 3 4 range
A 2016.9
(-3)
P 		2052.9
(-2.6)
P 		2564.6
(2.6)
P 		2608.7
(3)
P 		592
B 1875.9
(-3)
P 		2287.7
(-0.2)
P 		2057.7
(-1.8)
P 		2759.1
(3)
P 		883
C 1919.4
(-3)
P 		2393.1
(2.4)
P 		2370.8
(2.1)
P 		2446.9
(3)
P 		528
avr 1937.4
(-3) 		2244.6
(-0.2) 		2331
(0.5) 		2604.9
(3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1033
1 2 3 4 5 6 range
A 1715
(-1.2)
P 		1812.4
(-0.4)
P 		1489.4
(-3)
P 		2193.7
(2.8)
P 		2044.1
(1.5)
P 		2221.1
(3)
P 		732
B 1744.9
(0.5)
P 		1639.6
(-0.2)
P 		1187.8
(-3)
P 		1811.8
(0.9)
P 		1938
(1.7)
P 		2154
(3)
P 		966
C 1612.2
(-2.1)
P 		1522.9
(-3)
P 		1945.3
(1.1)
P 		2032.6
(2)
P 		2140.3
(3)
P 		2006.3
(1.7)
P 		617
avr 1690.7
(-1.5) 		1658.3
(-1.8) 		1540.8
(-3) 		2012.7
(1.8) 		2040.8
(2.1) 		2127.1
(3) 		586
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 734.4
(3)
P 		445.6
(-1.9)
P 		670.4
(1.9)
P 		381.9
(-3)
P 		353
B 598.2
(3)
P 		565
(1.4)
P 		476.8
(-3)
P 		588
(2.5)
P 		121
C 635.4
(0.2)
P 		688
(1)
P 		826.3
(3)
P 		412.6
(-3)
P 		414
avr 656
(2.9) 		566.2
(0.2) 		657.8
(3) 		460.8
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 515
1 2 3 4 5 6 range
A 316.2
(-3)
P 		644.6
(3)
P 		324.4
(-2.9)
P 		556.4
(1.4)
P 		616.8
(2.5)
P 		540.8
(1.1)
P 		328
B 607.1
(0.7)
P 		545.7
(-0)
P 		288.4
(-3)
P 		479.9
(-0.8)
P 		787.4
(2.8)
P 		803.2
(3)
P 		515
C 597.6
(1)
P 		464.7
(-1.8)
P 		495.1
(-1.2)
P 		408.8
(-3)
P 		692.6
(3)
P 		671.6
(2.6)
P 		284
avr 507
(-0.5) 		551.7
(0.3) 		369.3
(-3) 		481.7
(-1) 		698.9
(3) 		671.9
(2.5) 		330
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184582_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5990
Sequence Type Exemplar sequence
Representative Public ID F57B9.10 NCBI
Target Description F57B9.10 /REP_DB=WormBase Gene ID /WP=CE25011 /TR=Q20938 /GB=AAA21173.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027450(11), NM_001027451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027450 NCBI Caenorhabditis elegans proteasome Regulatory Particle, Non-ATPase-like family member (rpn-6) (rpn-6) mRNA, complete cds. 11/11 None
NM_001027451 NCBI Caenorhabditis elegans proteasome Regulatory Particle, Non-ATPase-like family member (rpn-6) (rpn-6) mRNA, complete cds. 11/11 None
SNAP00000019905 ENSEMBL cdna:SNAP chromosome:CEL140:III:6959321:6960862:-1 11/11 None
GENEFINDER00000019911 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6959321:6962127:-1 11/11 None
F57B9.10a ENSEMBL cdna:known chromosome:CEL140:III:6959046:6961957:-1 gene:F57B9.10 11/11 None
F57B9.10b.2 ENSEMBL cdna:known chromosome:CEL140:III:6959321:6960872:-1 gene:F57B9.10 11/11 None
F57B9.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:6959321:6960870:-1 gene:F57B9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6959318-6961881(-) 100.0 100.0
Public Domain and Genome References
Ensembl F57B9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21173 Proteasome regulatory particle, non-atpase-like protein 6, isoform a [Caenorhabditis elegans] ref|NP_001022621.1| proteasome Regulatory Particle, Non-ATPase-like family member (rpn-6) [Caenorhabditis elegans] 0.0
blast AAW88394 Proteasome regulatory particle, non-atpase-like protein 6, isoform b [Caenorhabditis elegans] ref|NP_001022622.1| proteasome Regulatory Particle, Non-ATPase-like family member (rpn-6) [Caenorhabditis elegans] 0.0
blast CAE70053 Hypothetical protein CBG16487 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 3.5E-26
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 3.5E-26
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 3.5E-26
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 3.5E-26
Sequence
Target Sequence 
>C. ELEGANS:184582_S_AT
cacgctgccgacgagaaggacttcaagacagctttctcatacttttacgaagcatttgag
ggatacgattcggttgatgaaaaagtgtccgccctcaccgctcttaagtatatgcttctg
tgcaaggtgatgcttgaccttccagatgaggtgaacagtcttctgtccgcaaaacttgct
cttaaatacaatggttctgatttggatgcgatgaaggcgatcgccgcagctgcacaaaag
agatctcttaaggatttccaagttgcattcggttctttcccacaggaacttcaaatggat
ccagttgtccgaaaacatttccattctttgagtgaacgaatgcttgaaaaagatctgtgc
cgtattattgagccatactcattcgttcaaattgaacatgttgctcaacagattggaatt
gatagatcaaaggtcgaaaagaagttgtcccaaatgattctcgatcaaaaactttcggga
tctcttgatcaaggcgagggaatgcttattgtatttgaaattgctgttcccgatgaggcg
taccaaactgctctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCTGCCGACGAGAAGGACTTCA 607 199 709 Antisense
TGATGAAAAAGTGTCCGCCCTCACC 211 567 783 Antisense
GCCCTCACCGCTCTTAAGTATATGC 186 287 799 Antisense
GTGATGCTTGACCTTCCAGATGAGG 427 483 835 Antisense
CAGTCTTCTGTCCGCAAAACTTGCT 577 205 864 Antisense
CGATGAAGGCGATCGCCGCAGCTGC 293 249 917 Antisense
GGATTTCCAAGTTGCATTCGGTTCT 5 511 960 Antisense
TCGGTTCTTTCCCACAGGAACTTCA 471 603 977 Antisense
GAGCCATACTCATTCGTTCAAATTG 535 385 1078 Antisense
AAATTGCTGTTCCCGATGAGGCGTA 653 115 1226 Antisense
TGAGGCGTACCAAACTGCTCTGGAT 316 567 1242 Antisense
Sequence Source Affymetrix Proprietary Database