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[184581_s_at]

Description T02G5.10 /REP_DB=WormBase Gene ID /WP=CE04862 /TR=Q22102 /GB=AAA82399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 8.5
(-2.5)
A 		32.3
(0.3)
A 		4.2
(-3)
A 		55.8
(3)
A 		52
B 25.9
(1.9)
A 		8.3
(-2)
A 		3.9
(-3)
A 		30.7
(3)
A 		27
C 19.6
(-2.1)
A 		8.3
(-2.8)
A 		4.5
(-3)
A 		100
(3)
A 		96
avr 18
(-1.6) 		16.3
(-1.7) 		4.2
(-3) 		62.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 2.2
(-3)
A 		9.8
(3)
A 		7.9
(1.5)
A 		5.9
(-0.1)
A 		9.2
(2.5)
A 		7.9
(1.5)
A 		8
B 26.6
(3)
A 		3.1
(-3)
A 		19.2
(1.1)
A 		7.6
(-1.9)
A 		4.7
(-2.6)
A 		17.6
(0.7)
A 		24
C 32.6
(1.3)
A 		33.6
(1.5)
A 		5.1
(-2.6)
A 		44.4
(3)
A 		2.5
(-3)
A 		3.7
(-2.8)
A 		42
avr 20.5
(3) 		15.5
(1) 		10.7
(-0.9) 		19.3
(2.5) 		5.5
(-3) 		9.7
(-1.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.1
(-1.3)
A 		7
(2)
A 		1.1
(-3)
A 		8.2
(3)
A 		7
B 8.3
(3)
A 		2.1
(-2)
A 		0.9
(-3)
A 		6.5
(1.5)
A 		7
C 6.5
(-1.1)
A 		2.4
(-2.7)
A 		1.6
(-3)
A 		16.9
(3)
A 		15
avr 6
(0.1) 		3.8
(-1.3) 		1.2
(-3) 		10.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		3.5
(3)
A 		1.7
(-0.5)
A 		1.5
(-0.9)
A 		2.8
(1.6)
A 		1.9
(-0.1)
A 		3
B 9.3
(3)
A 		1
(-3)
A 		4.7
(-0.3)
A 		2
(-2.3)
A 		1.9
(-2.3)
A 		6.5
(1)
A 		8
C 12.1
(3)
A 		10.3
(2)
A 		1.3
(-2.7)
A 		8.9
(1.3)
A 		0.8
(-3)
A 		1.3
(-2.7)
A 		11
avr 7.3
(3) 		4.9
(0.4) 		2.6
(-2.1) 		4.1
(-0.5) 		1.8
(-3) 		3.2
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184581_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5700
Sequence Type Exemplar sequence
Representative Public ID T02G5.10 NCBI
Target Description T02G5.10 /REP_DB=WormBase Gene ID /WP=CE04862 /TR=Q22102 /GB=AAA82399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078270 NCBI Caenorhabditis elegans F38E9.3 (reverse-transcriptase) mRNA, complete cds. 11/11 A 
SNAP00000008004 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14319801:14325612:-1 9/11 None
SNAP00000018446 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16241792:16243810:1 11/11 None
GENEFINDER00000018447 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16242071:16243810:1 11/11 None
SNAP00000032043 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6343657:6346548:-1 11/11 None
GENEFINDER00000032101 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6343657:6346548:-1 11/11 None
SNAP00000030337 ENSEMBL cdna:SNAP chromosome:CEL140:X:16452846:16455744:1 11/11 None
GENEFINDER00000030348 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16453126:16455744:1 11/11 None
F38E9.3 ENSEMBL cdna:known chromosome:CEL140:X:16452738:16455744:1 gene:F38E9.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7077359-7077976(-) 26.06 100.0
Public Domain and Genome References
Ensembl F38E9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 0.0
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 0.0
blast T25782 hypothetical protein F47D2.2 - Caenorhabditis elegans 0.0
blast NP_501072 B0478.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 9.1E-24
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.8E-84
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-43
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.4E-7
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.8E-20
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.7E-47
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 9.2E-80
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 2.2E-24
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.7E-82
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 9.1E-24
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.8E-84
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.2E-15
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.8E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510671.1 1 109-131
F38E9.3 1 109-131
SNAP00000030337 1 73-95
Sequence
Target Sequence 
>C. ELEGANS:184581_S_AT
aacgctgcaacataaagtattcttcatacgaggatcgtttggcccaagccaatttgaagt
cagtgcaatataggcgggtcttgcagatccttcgcacctaccacaacatcataactggaa
acttccactacccaaatgtgtcatcgtcggtgaagaaagctgtaactccaagatacccct
acatgctcagatctgttggcgaaacaaacaaaggattcctcagagccaacctcgccacct
ggaaccgcctagcaaagcaaatcccggaaaaattaaatcgctctatgtttgcttcccggt
taaattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCTGCAACATAAAGTATTCTTC 32 145 167 Antisense
AAGTATTCTTCATACGAGGATCGTT 559 155 181 Antisense
GAGGATCGTTTGGCCCAAGCCAATT 197 403 196 Antisense
GCCCAAGCCAATTTGAAGTCAGTGC 155 287 208 Antisense
ACAACATCATAACTGGAAACTTCCA 559 111 269 Antisense
GAAACTTCCACTACCCAAATGTGTC 326 355 284 Antisense
CCCAAATGTGTCATCGTCGGTGAAG 709 257 297 Antisense
GTCGGTGAAGAAAGCTGTAACTCCA 28 473 312 Antisense
TGTAACTCCAAGATACCCCTACATG 279 555 327 Antisense
ATTAAATCGCTCTATGTTTGCTTCC 263 13 438 Antisense
TATGTTTGCTTCCCGGTTAAATTCT 700 653 450 Antisense
Sequence Source Affymetrix Proprietary Database