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[184579_at]

Description C04E12.3 /REP_DB=WormBase Gene ID /WP=CE27648 /TR=O76678 /GB=AAC27089.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      6grp_total > 21      4grp_total > 53      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 316.8
(3)
P 		146.3
(-0.3)
P 		120.4
(-0.8)
P 		6.4
(-3)
A 		310
B 249.9
(3)
P 		145.3
(0.5)
P 		136.7
(0.3)
P 		1.7
(-3)
A 		248
C 237.9
(3)
P 		160.8
(0.7)
P 		167.9
(0.9)
P 		37.9
(-3)
A 		200
avr 268.2
(3) 		150.8
(0.2) 		141.7
(-0) 		15.3
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 148.2
(-0.4)
P 		302.2
(3)
P 		289
(2.7)
P 		177.9
(0.2)
P 		114.5
(-1.2)
P 		32.1
(-3)
A 		270
B 169
(-0.2)
P 		242.4
(1.3)
P 		327.7
(3)
P 		172.5
(-0.2)
P 		81.4
(-2)
P 		32.5
(-3)
A 		295
C 212
(1.3)
P 		264.9
(2.6)
P 		280.3
(3)
P 		98.2
(-1.5)
A 		104.7
(-1.4)
P 		38.7
(-3)
P 		242
avr 176.4
(0.2) 		269.8
(2.3) 		299
(3) 		149.5
(-0.4) 		100.2
(-1.5) 		34.4
(-3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 115.4
(3)
P 		31.8
(-1.4)
P 		31.5
(-1.4)
P 		0.9
(-3)
A 		115
B 79.7
(3)
P 		35.9
(-0.3)
P 		31.7
(-0.6)
P 		0.4
(-3)
A 		79
C 78.8
(3)
P 		46.2
(0.3)
P 		58.5
(1.3)
P 		6.4
(-3)
A 		72
avr 91.3
(3) 		38
(-0.6) 		40.6
(-0.4) 		2.6
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 27.3
(-1.8)
P 		107.5
(3)
P 		62.9
(0.3)
P 		45.1
(-0.8)
P 		34.6
(-1.4)
P 		7.8
(-3)
A 		100
B 58.8
(1.1)
P 		80.7
(3)
P 		79.6
(2.9)
P 		45.7
(-0.1)
P 		33.1
(-1.2)
P 		12.1
(-3)
A 		69
C 78.6
(2.8)
P 		80.8
(3)
P 		71.4
(2.2)
P 		19.7
(-2.4)
A 		33.9
(-1.2)
P 		13
(-3)
P 		68
avr 54.9
(0.3) 		89.7
(3) 		71.3
(1.6) 		36.8
(-1) 		33.9
(-1.3) 		11
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15465
Sequence Type Exemplar sequence
Representative Public ID C04E12.3 NCBI
Target Description C04E12.3 /REP_DB=WormBase Gene ID /WP=CE27648 /TR=O76678 /GB=AAC27089.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071535
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029761 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3362626:3368866:1 None
NM_071535 NCBI Caenorhabditis elegans C04E12.4 (C04E12.4) mRNA, complete cds. A 
C04E12.4 ENSEMBL cdna:known chromosome:CEL140:V:3362626:3368167:1 gene:C04E12.4 A 
SNAP00000029750 ENSEMBL cdna:SNAP chromosome:CEL140:V:3367408:3368866:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3367075-3368104(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.4
Entrez Gene 178767 Entrez gene
SwissProt O76677 EMBL-EBI
WormBase CE30721 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 0.0
blast T33413 hypothetical protein C04E12.4 - Caenorhabditis elegans 0.0
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 1.0E-172
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 1.0E-171
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.1E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-39
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.8E-46
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.8E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503936.2 1 30-52
C04E12.4 1 30-52
GENEFINDER00000029761 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:184579_AT
aattttgtactgagaaggatgctttgatgttatcaacaacgacaccgggaagtattgtca
cgacaaaatcttcaactacaccaattacagaaccagatcatcaacctgacatttcaacaa
caccgctgactgaaagttacgaaattatccaattgaaaccggaaaccggaagagactacg
caaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTGTACTGAGAAGGATGCTTT 460 173 53 Antisense
GAGAAGGATGCTTTGATGTTATCAA 337 391 64 Antisense
GATGTTATCAACAACGACACCGGGA 47 409 78 Antisense
ACACCGGGAAGTATTGTCACGACAA 443 91 94 Antisense
AACTACACCAATTACAGAACCAGAT 22 141 126 Antisense
ACAGAACCAGATCATCAACCTGACA 351 109 139 Antisense
CAACCTGACATTTCAACAACACCGC 511 187 154 Antisense
ACATTTCAACAACACCGCTGACTGA 267 105 161 Antisense
AACACCGCTGACTGAAAGTTACGAA 254 109 171 Antisense
TACGAAATTATCCAATTGAAACCGG 410 341 190 Antisense
GAAACCGGAAGAGACTACGCAAAGT 40 357 214 Antisense
Sequence Source Affymetrix Proprietary Database