[Home] | [Total List]

[184578_at]

Description Y106G6A.2 /REP_DB=WormBase Gene ID /WP=CE19295 /TR=Q9XWQ4 /GB=CAA21595.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 82      6grp_total > 68      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 472.1
(3)
P 		293.4
(-1.7)
P 		243.3
(-3)
P 		440.8
(2.2)
P 		229
B 432.1
(3)
P 		296.9
(-1.1)
P 		235.3
(-3)
P 		417.8
(2.6)
P 		197
C 490.3
(3)
P 		353.4
(-1.4)
P 		304.4
(-3)
P 		466.5
(2.2)
P 		186
avr 464.8
(3) 		314.6
(-1.4) 		261
(-3) 		441.7
(2.3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 267.2
(-3)
P 		325.2
(-0)
P 		362.1
(1.8)
P 		306.8
(-1)
P 		374.3
(2.5)
P 		384.7
(3)
P 		118
B 351.7
(-1.8)
P 		306.2
(-3)
P 		379.2
(-1.1)
P 		328.2
(-2.4)
P 		382.8
(-1)
P 		540.1
(3)
P 		234
C 372.6
(-1)
P 		285.6
(-2.8)
P 		278.3
(-3)
P 		300.4
(-2.5)
P 		289.9
(-2.8)
P 		566.8
(3)
P 		289
avr 330.5
(-2.2) 		305.7
(-3) 		339.9
(-1.9) 		311.8
(-2.8) 		349
(-1.6) 		497.2
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 171.9
(3)
P 		63.7
(-3)
P 		63.6
(-3)
P 		64.5
(-3)
P 		108
B 137.8
(3)
P 		73.3
(-1.6)
P 		54.5
(-3)
P 		89
(-0.5)
P 		83
C 162.3
(3)
P 		101.6
(-1.4)
P 		106.1
(-1)
P 		78.7
(-3)
P 		84
avr 157.3
(3) 		79.5
(-2.7) 		74.7
(-3) 		77.4
(-2.8) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 49.3
(-3)
P 		115.7
(3)
P 		78.9
(-0.3)
P 		77.8
(-0.4)
P 		113
(2.8)
P 		93.7
(1)
P 		66
B 122.4
(-1.1)
P 		101.9
(-2.2)
P 		92.1
(-2.7)
P 		86.9
(-3)
P 		155.5
(0.6)
P 		201.4
(3)
P 		115
C 138.1
(0.6)
P 		87.1
(-1.8)
P 		70.8
(-2.5)
P 		60.4
(-3)
P 		93.8
(-1.5)
P 		189.7
(3)
P 		129
avr 103.3
(-1) 		101.6
(-1.2) 		80.6
(-2.6) 		75
(-3) 		120.8
(0.2) 		161.6
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2313
Sequence Type Exemplar sequence
Representative Public ID Y106G6A.2 NCBI
Target Description Y106G6A.2 /REP_DB=WormBase Gene ID /WP=CE19295 /TR=Q9XWQ4 /GB=CAA21595.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002352(11), NM_170914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002352 NCBI Caenorhabditis elegans Y106G6A.2, miscRNA. 11/11 None
NM_170914 NCBI Caenorhabditis elegans Y106G6A.2a (Y106G6A.2) mRNA, complete cds. 11/11 A 
SNAP00000021906 ENSEMBL cdna:SNAP chromosome:CEL140:I:9940116:9942155:-1 11/11 None
GENEFINDER00000021912 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9940116:9942106:-1 11/11 None
Y106G6A.2a ENSEMBL cdna:known chromosome:CEL140:I:9939998:9942411:-1 gene:Y106G6A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9941090-9942086(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y106G6A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21595 Hypothetical protein Y106G6A.2a [Caenorhabditis elegans] ref|NP_740908.1| Y106G6A.2a [Caenorhabditis elegans] 0.0
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 0.0
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 1.0E-180
blast CAE60257 Hypothetical protein CBG03832 [Caenorhabditis briggsae] 1.0E-158
blast T26407 hypothetical protein Y106G6A.3 - Caenorhabditis elegans 1.0E-91
Sequence
Target Sequence 
>C. ELEGANS:184578_AT
tcccgacgagagaatattacacaaagatatgaagaaaaagaacgacttcaagcagaaata
ctagctttcattgatccaacagagtctctgaaagagcagataacaattaaagaagatcga
ctaataaagcttcatattgccgttgaaaatgcaaaaatgcggattgcaatgaagcaaagt
gaagtgaataaattggatactactccacattctaaaccatcacaatttgatgcagttttc
acctcacagagcaatttcatctcgagagctgatattaagaaaaaagaaaaatcagaaaga
ttaacgaaactcgaagaggaagtcgctaaaaagcgtctaaaatattgtattcatgcgtgt
cgcatatttccagttcaagtgtatgatgtcaacgtggaaagtgtgactgtgaaatcgaaa
aactcgaaaaattgggcagttgtgaacgattcagagctgcagaagggtttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGACGAGAGAATATTACACAAA 526 597 373 Antisense
CATTGATCCAACAGAGTCTCTGAAA 580 217 441 Antisense
TAATAAAGCTTCATATTGCCGTTGA 463 629 494 Antisense
TACTCCACATTCTAAACCATCACAA 432 647 573 Antisense
TTTGATGCAGTTTTCACCTCACAGA 147 667 598 Antisense
ACCTCACAGAGCAATTTCATCTCGA 36 89 613 Antisense
GAGCAATTTCATCTCGAGAGCTGAT 358 391 621 Antisense
TGCGTGTCGCATATTTCCAGTTCAA 367 583 726 Antisense
GTTCAAGTGTATGATGTCAACGTGG 82 445 745 Antisense
ATTGGGCAGTTGTGAACGATTCAGA 250 3 803 Antisense
GATTCAGAGCTGCAGAAGGGTTTAA 172 431 820 Antisense
Sequence Source Affymetrix Proprietary Database