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[184576_at]

Description Y46B2A.1 /REP_DB=WormBase Gene ID /WP=CE21951 /TR=Q9N4X2 /GB=AAF60595.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 46      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.9
(3)
A 		3.8
(-3)
A 		6
(-1.1)
A 		9.1
(1.5)
A 		7
B 8.1
(-0.7)
A 		15.2
(3)
A 		7.1
(-1.3)
A 		3.8
(-3)
A 		11
C 8.3
(0.9)
A 		5.1
(-3)
A 		8.4
(1)
A 		10
(3)
A 		5
avr 9.1
(3) 		8
(-0.5) 		7.2
(-3) 		7.6
(-1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 143.5
(1.4)
P 		61.6
(-1.9)
A 		35.9
(-3)
A 		48.2
(-2.5)
A 		35.5
(-3)
A 		183.2
(3)
P 		148
B 58
(-0.6)
A 		44.2
(-1.3)
A 		24.1
(-2.3)
A 		11.5
(-3)
A 		40.8
(-1.5)
A 		125.9
(3)
P 		114
C 160.5
(3)
P 		24.8
(-2.7)
A 		81.5
(-0.3)
A 		18.5
(-3)
A 		24.3
(-2.8)
A 		115.5
(1.1)
P 		142
avr 120.7
(1.9) 		43.5
(-2.1) 		47.2
(-1.9) 		26.1
(-3) 		33.5
(-2.6) 		141.5
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4
(3)
A 		0.8
(-3)
A 		1.6
(-1.5)
A 		1.3
(-2.1)
A 		3
B 2.6
(0.7)
A 		3.7
(3)
A 		1.6
(-1.3)
A 		0.8
(-3)
A 		3
C 2.7
(2.1)
A 		1.5
(-3)
A 		2.9
(3)
A 		1.7
(-2.1)
A 		1
avr 3.1
(3) 		2
(-0.7) 		2
(-0.7) 		1.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 26.5
(0)
P 		21.9
(-0.7)
A 		7.8
(-3)
A 		12.2
(-2.3)
A 		10.7
(-2.5)
A 		44.6
(3)
P 		37
B 20.2
(-0.7)
A 		14.7
(-1.4)
A 		5.9
(-2.6)
A 		3
(-3)
A 		16.6
(-1.1)
A 		47
(3)
P 		44
C 59.5
(3)
P 		7.6
(-2.6)
A 		20.7
(-1.2)
A 		3.7
(-3)
A 		7.8
(-2.6)
A 		38.6
(0.8)
P 		56
avr 35.4
(1.7) 		14.7
(-1.6) 		11.5
(-2.2) 		6.3
(-3) 		11.7
(-2.1) 		43.4
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4679
Sequence Type Exemplar sequence
Representative Public ID Y46B2A.1 NCBI
Target Description Y46B2A.1 /REP_DB=WormBase Gene ID /WP=CE21951 /TR=Q9N4X2 /GB=AAF60595.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061435 NCBI Caenorhabditis elegans Y46B2A.1 (Y46B2A.1) mRNA, complete cds. 11/11 None
SNAP00000022588 ENSEMBL cdna:SNAP chromosome:CEL140:II:868837:871605:1 11/11 None
GENEFINDER00000022589 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:868837:871605:1 11/11 None
Y46B2A.1 ENSEMBL cdna:known chromosome:CEL140:II:868820:871694:1 gene:Y46B2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:868836-871605(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46B2A.1
Entrez Gene 173467 Entrez gene
SwissProt Q9N4X2 EMBL-EBI
WormBase CE21951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60595 Hypothetical protein Y46B2A.1 [Caenorhabditis elegans] ref|NP_493836.1| Y46B2A.1 [Caenorhabditis elegans] 0.0
blast CAE66546 Hypothetical protein CBG11854 [Caenorhabditis briggsae] 1.0E-17
blast AAB66236 Hypothetical protein R07C3.6 [Caenorhabditis elegans] ref|NP_493852.1| R07C3.6 [Caenorhabditis elegans] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184576_AT
tgatgcaggtggggtctaccgactccccgagaattttaaagtgaaagtttccaatatgag
atttggtacggagttcggactgctttgggatggtctgaacagtattttccacgagagcac
tctgcctttcaagagcttgcatatgcctctagagcacgaccacccagttatccatgccac
ccagcgtctggttatcggaactgagaaaatgtttggggagaactttgcctggatcccttt
cctactgaagcttccacagaagaatgtctacatgcttcatagtccactgttccatcatga
ctatgtgcagctgattgataattggatcgagacaccgaagagtattgggacctgctttac
gtttggtgttaagcagtatcacgccacccaatccacattgaacttgctcggggatcatcc
gatggttgtgagcaagaggatggagggagtagactgcaccgaattccctcactgcttcaa
catcccgctgacctatgaatccgagcttaatgtctacggtaagaagagaactgaaaactt
ggaccctttggagtttatgccacatgtcagttggtgcctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGCAGGTGGGGTCTACCGACTC 441 565 912 Antisense
TACGGAGTTCGGACTGCTTTGGGAT 158 585 978 Antisense
AGTATTTTCCACGAGAGCACTCTGC 352 63 1012 Antisense
AGCACTCTGCCTTTCAAGAGCTTGC 397 77 1027 Antisense
GAGCTTGCATATGCCTCTAGAGCAC 315 389 1044 Antisense
ACCCAGCGTCTGGTTATCGGAACTG 679 89 1090 Antisense
CCTTTCCTACTGAAGCTTCCACAGA 396 269 1147 Antisense
TACATGCTTCATAGTCCACTGTTCC 191 645 1180 Antisense
GAGTATTGGGACCTGCTTTACGTTT 294 397 1251 Antisense
GGACCCTTTGGAGTTTATGCCACAT 283 509 1452 Antisense
ATGCCACATGTCAGTTGGTGCCTGG 424 41 1468 Antisense
Sequence Source Affymetrix Proprietary Database