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[184575_at]

Description C12D12.3 /REP_DB=WormBase Gene ID /WP=CE06815 /TR=Q17919 /GB=AAA96078.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 35
(-0.8)
A 		39.8
(0.7)
A 		47.4
(3)
A 		27.7
(-3)
A 		20
B 48.2
(0.2)
A 		35.8
(-3)
A 		38
(-2.4)
A 		58.8
(3)
A 		23
C 55.7
(0)
A 		32
(-3)
A 		37.5
(-2.3)
A 		79.2
(3)
P 		47
avr 46.3
(0.2) 		35.9
(-3) 		41
(-1.4) 		55.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 46.1
(0.5)
A 		48.2
(0.7)
A 		62.3
(2.3)
P 		68.7
(3)
A 		20.8
(-2.4)
A 		15.3
(-3)
A 		53
B 45.8
(-1.2)
A 		18.4
(-3)
A 		59.5
(-0.4)
A 		66.3
(0.1)
P 		111.8
(3)
P 		19.7
(-2.9)
A 		93
C 39.5
(-0.8)
A 		66.2
(1)
P 		7.6
(-3)
A 		96.5
(3)
A 		57.6
(0.4)
A 		55.1
(0.2)
M 		89
avr 43.8
(-1.2) 		44.3
(-1.2) 		43.1
(-1.3) 		77.2
(3) 		63.4
(1.2) 		30
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.7
(3)
A 		8.6
(0.1)
A 		12.4
(2.8)
A 		4.1
(-3)
A 		9
B 15.4
(3)
A 		8.8
(-3)
A 		8.8
(-3)
A 		12.5
(0.4)
A 		7
C 18.5
(3)
A 		9.2
(-3)
A 		13.1
(-0.5)
A 		13.4
(-0.3)
P 		9
avr 15.5
(3) 		8.9
(-3) 		11.4
(-0.7) 		10
(-2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 8.5
(-0.9)
A 		17.1
(2.9)
A 		13.6
(1.3)
P 		17.4
(3)
A 		6.3
(-1.9)
A 		3.7
(-3)
A 		14
B 15.9
(-1.5)
A 		6.1
(-3)
A 		14.5
(-1.7)
A 		17.6
(-1.2)
P 		45.4
(3)
P 		7.3
(-2.8)
A 		39
C 14.6
(1.2)
A 		20.2
(3)
P 		1.9
(-3)
A 		19.4
(2.7)
A 		18.6
(2.5)
A 		18.5
(2.4)
M 		18
avr 13
(-1.6) 		14.5
(-0.9) 		10
(-2.9) 		18.1
(0.7) 		23.4
(3) 		9.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18621
Sequence Type Exemplar sequence
Representative Public ID C12D12.3 NCBI
Target Description C12D12.3 /REP_DB=WormBase Gene ID /WP=CE06815 /TR=Q17919 /GB=AAA96078.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076198 NCBI Caenorhabditis elegans C12D12.3 (C12D12.3) mRNA, complete cds. 11/11 None
SNAP00000040495 ENSEMBL cdna:SNAP chromosome:CEL140:X:3489289:3491213:1 11/11 None
C12D12.3 ENSEMBL cdna:known chromosome:CEL140:X:3489289:3491213:1 gene:C12D12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040502 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3489289-3491214(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D12.3
Entrez Gene 182545 Entrez gene
SwissProt Q17919 EMBL-EBI
WormBase CE06815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96078 Hypothetical protein C12D12.3 [Caenorhabditis elegans] ref|NP_508599.1| C12D12.3 [Caenorhabditis elegans] 2.0E-97
blast CAE68438 Hypothetical protein CBG14223 [Caenorhabditis briggsae] 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508599.1 4 34-56,60-79,92-114,206-224
C12D12.3 4 34-56,60-79,92-114,206-224
SNAP00000040495 4 34-56,60-79,92-114,206-224
Sequence
Target Sequence 
>C. ELEGANS:184575_AT
ggatgcatgtaacgatggcggcacgaataatcctggccgtagaactaattctacttttta
tcacagtggtgattgtgccattgacgattggattcttcgatacaatatcactatttcaaa
ttttagtgacaggatccatatggatcatggcaatgattgcattaaatcgccatagacata
ctttattatggcctataataattttaaaaatatctgagataatcctcggcgtattcctaa
tagtgatcgccgcgttgttagccgttgttcgaagacgcgtactattgcgattaatgcaat
ggaggataacaacaatagatcgtaagaaccatgaaacattgtcccttaaaaaaccaacct
tcagattccaaccaaggcattcacattattggtttattgctttttatgttgcttcaaatt
gtgtacaacacaatagcagtacaaacactgtgggacgtgttcgaatatcttcggcagcgg
acgatatttatgtacaatcaggaacgatcgcaagtgcaccagtactttttgtgagaaact
gtctcgcgtattatcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCATGTAACGATGGCGGCACG 80 513 86 Antisense
GGCGGCACGAATAATCCTGGCCGTA 95 541 102 Antisense
GTGCCATTGACGATTGGATTCTTCG 152 479 160 Antisense
TAATCCTCGGCGTATTCCTAATAGT 670 635 305 Antisense
TCCTAATAGTGATCGCCGCGTTGTT 668 591 320 Antisense
GCGTTGTTAGCCGTTGTTCGAAGAC 590 291 337 Antisense
GAACCATGAAACATTGTCCCTTAAA 461 343 411 Antisense
AGATTCCAACCAAGGCATTCACATT 536 65 448 Antisense
GACGTGTTCGAATATCTTCGGCAGC 592 375 539 Antisense
GAACGATCGCAAGTGCACCAGTACT 206 343 587 Antisense
AGAAACTGTCTCGCGTATTATCAAG 708 71 619 Antisense
Sequence Source Affymetrix Proprietary Database