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[184574_at]

Description Y54G11B.1 /REP_DB=WormBase Gene ID /WP=CE16663 /TR=O45249 /GB=CAB03877.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 51      4grp_high_8_8 > 25      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 710
1 2 3 4 range
A 879.4
(3)
P 		331.8
(-2.3)
P 		254.8
(-3)
P 		453.4
(-1.1)
P 		625
B 964.9
(3)
P 		448.4
(-1.5)
P 		279.9
(-3)
P 		370.9
(-2.2)
P 		685
C 948.8
(3)
P 		283.8
(-3)
P 		295.1
(-2.9)
P 		357.7
(-2.3)
P 		665
avr 931
(3) 		354.7
(-2.3) 		276.6
(-3) 		394
(-1.9) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 596.2
(3)
P 		388.1
(-0.3)
P 		332.7
(-1.2)
P 		220.9
(-2.9)
P 		246.6
(-2.5)
P 		216.3
(-3)
P 		380
B 469.4
(3)
P 		375.8
(1.1)
P 		292.3
(-0.7)
P 		255.4
(-1.4)
P 		312.3
(-0.3)
P 		180.5
(-3)
P 		289
C 598.7
(3)
P 		462.3
(0.9)
P 		301.8
(-1.6)
P 		212.7
(-3)
P 		229.7
(-2.7)
P 		263.2
(-2.2)
P 		386
avr 554.8
(3) 		408.7
(0.4) 		308.9
(-1.4) 		229.7
(-2.8) 		262.9
(-2.2) 		220
(-3) 		335
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 320.2
(3)
P 		72
(-2.9)
P 		66.6
(-3)
P 		66.4
(-3)
P 		254
B 307.7
(3)
P 		110.7
(-1.9)
P 		64.9
(-3)
P 		79
(-2.7)
P 		243
C 314.1
(3)
P 		81.6
(-2.5)
P 		102.8
(-2)
P 		60.3
(-3)
P 		254
avr 314
(3) 		88.1
(-2.5) 		78.1
(-2.8) 		68.6
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 109.9
(1)
P 		138
(3)
P 		72.5
(-1.6)
P 		56
(-2.8)
P 		74.4
(-1.5)
P 		52.7
(-3)
P 		85
B 163.3
(3)
P 		125.1
(0.6)
P 		71
(-2.8)
P 		67.7
(-3)
P 		126.9
(0.7)
P 		67.3
(-3)
P 		96
C 221.9
(3)
P 		141
(0.3)
P 		76.8
(-1.9)
P 		42.8
(-3)
P 		74.3
(-1.9)
P 		88.1
(-1.5)
P 		179
avr 165
(3) 		134.7
(1.3) 		73.4
(-2) 		55.5
(-3) 		91.9
(-1) 		69.4
(-2.2) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3585
Sequence Type Exemplar sequence
Representative Public ID Y54G11B.1 NCBI
Target Description Y54G11B.1 /REP_DB=WormBase Gene ID /WP=CE16663 /TR=O45249 /GB=CAB03877.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064603 NCBI Caenorhabditis elegans Y54G11B.1 (Y54G11B.1) mRNA, complete cds. 11/11 None
SNAP00000037457 ENSEMBL cdna:SNAP chromosome:CEL140:II:14462555:14464215:1 9/11 None
GENEFINDER00000037458 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14462280:14464215:1 9/11 None
Y54G11B.1 ENSEMBL cdna:known chromosome:CEL140:II:14455522:14464802:1 gene:Y54G11B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027402 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14462276-14464620(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G11B.1
Entrez Gene 190297 Entrez gene
SwissProt O45249 EMBL-EBI
WormBase CE16663 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03877 Hypothetical protein Y54G11B.1 [Caenorhabditis elegans] emb|CAA15983.1| Hypothetical protein Y54G11B.1 [Caenorhabditis elegans] ref|NP_497004.1| Y54G11B.1 [Caenorhabditis elegans] 0.0
blast CAE57929 Hypothetical protein CBG00982 [Caenorhabditis briggsae] 0.0
blast CAE57929 Hypothetical protein CBG00982 [Caenorhabditis briggsae] 1.0E-172
blast CAB03877 Hypothetical protein Y54G11B.1 [Caenorhabditis elegans] emb|CAA15983.1| Hypothetical protein Y54G11B.1 [Caenorhabditis elegans] ref|NP_497004.1| Y54G11B.1 [Caenorhabditis elegans] 1.0E-146
blast CAE57929 Hypothetical protein CBG00982 [Caenorhabditis briggsae] 1.0E-139
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 5.0E-63
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 7.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497004.1 7 33-55,68-90,110-132,152-174,211-233,261-283,298-320
Y54G11B.1 7 33-55,68-90,110-132,152-174,211-233,261-283,298-320
SNAP00000037457 6 7-29,52-74,95-114,151-173,201-223,238-260
GENEFINDER00000037458 7 33-55,68-90,110-132,152-174,211-233,261-283,298-320
Sequence
Target Sequence 
>C. ELEGANS:184574_AT
aaaggcaacctgtggctgactggaatttttttgaaggctataccatgtcttctcctgcta
acattcaccattgctctaatcaaccgtcttcgtgaaaacaacgaaaaacgaaagatattg
ataaaagaggaacgcgccaaaaagcgcggagacttcaccacctacatgcttcttctcatg
gttactgtctttttgttcacagaattaccacaggggatcatggcaattttgaacgctctg
ttcactactcaattccaccagatggtctacttgaacctggccgacgttttagacctcctg
tcgttaatcaattgctacgtggcatttttggtgtacagtttcacatcatccagataccga
cagacgctgttcagcttgttaccattgacaaaaatttcctattccggaatctccacccgt
caaggaaccttgaaatctcatcaacaccctggagcaaaaacgttggtgcagcgagccaac
tcagttgaggtggcttctgctcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCAACCTGTGGCTGACTGGAA 349 117 631 Antisense
CTGCTAACATTCACCATTGCTCTAA 30 239 685 Antisense
TGCTCTAATCAACCGTCTTCGTGAA 630 579 702 Antisense
CTTCTTCTCATGGTTACTGTCTTTT 482 221 799 Antisense
TTCACTACTCAATTCCACCAGATGG 363 687 871 Antisense
AGATGGTCTACTTGAACCTGGCCGA 457 67 890 Antisense
GACCTCCTGTCGTTAATCAATTGCT 12 381 922 Antisense
CATCATCCAGATACCGACAGACGCT 647 211 974 Antisense
CGCTGTTCAGCTTGTTACCATTGAC 467 255 995 Antisense
AAATCTCATCAACACCCTGGAGCAA 516 117 1063 Antisense
TCAGTTGAGGTGGCTTCTGCTCGAT 556 623 1111 Antisense
Sequence Source Affymetrix Proprietary Database