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[184573_at]

Description C12D12.5 /REP_DB=WormBase Gene ID /WP=CE06817 /TR=Q17922 /GB=AAA96081.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 80      6grp_total > 61      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 273.3
(3)
P 		213.1
(0.3)
P 		219.6
(0.6)
P 		140.6
(-3)
A 		133
B 295.2
(3)
P 		221.1
(0.9)
P 		161.7
(-0.8)
P 		84.2
(-3)
A 		211
C 301.5
(3)
P 		204.2
(-0.9)
P 		208.8
(-0.7)
P 		151.4
(-3)
A 		150
avr 290
(3) 		212.8
(0.2) 		196.7
(-0.4) 		125.4
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 193.6
(-0.5)
P 		192.6
(-0.5)
P 		253.5
(1.8)
P 		285.5
(3)
P 		162.8
(-1.6)
P 		127
(-3)
P 		159
B 182.1
(-0.5)
P 		250.1
(1.6)
P 		295.6
(3)
P 		220.6
(0.7)
P 		220.4
(0.7)
P 		99.8
(-3)
P 		196
C 176.3
(-1.3)
P 		208
(-0.4)
P 		316.1
(2.6)
P 		328.5
(3)
P 		294
(2)
P 		116.8
(-3)
P 		212
avr 184
(-0.6) 		216.9
(0.5) 		288.4
(3) 		278.2
(2.6) 		225.7
(0.8) 		114.5
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 99.5
(3)
P 		46.3
(-1)
P 		57.4
(-0.2)
P 		20.6
(-3)
A 		79
B 94.1
(3)
P 		54.6
(-0.1)
P 		37.5
(-1.5)
P 		17.9
(-3)
A 		76
C 99.8
(3)
P 		58.7
(-0.3)
P 		72.8
(0.8)
P 		25.5
(-3)
A 		74
avr 97.8
(3) 		53.2
(-0.5) 		55.9
(-0.3) 		21.3
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 35.7
(-2.3)
P 		68.5
(2.4)
P 		55.2
(0.5)
P 		72.4
(3)
P 		49.1
(-0.4)
P 		30.9
(-3)
P 		42
B 63.4
(0)
P 		83.2
(2.3)
P 		71.8
(1)
P 		58.4
(-0.6)
P 		89.5
(3)
P 		37.2
(-3)
P 		52
C 65.3
(-0.2)
P 		63.5
(-0.4)
P 		80.4
(1.4)
P 		66.1
(-0.1)
P 		95.1
(3)
P 		39.1
(-3)
P 		56
avr 54.8
(-0.3) 		71.7
(2.1) 		69.1
(1.7) 		65.6
(1.3) 		77.9
(3) 		35.7
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18608
Sequence Type Exemplar sequence
Representative Public ID C12D12.5 NCBI
Target Description C12D12.5 /REP_DB=WormBase Gene ID /WP=CE06817 /TR=Q17922 /GB=AAA96081.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076203 NCBI Caenorhabditis elegans C12D12.5 (C12D12.5) mRNA, complete cds. 11/11 None
SNAP00000040498 ENSEMBL cdna:SNAP chromosome:CEL140:X:3505553:3506352:-1 11/11 None
GENEFINDER00000040504 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3505553:3512357:-1 11/11 None
C12D12.5 ENSEMBL cdna:known chromosome:CEL140:X:3505503:3506352:-1 gene:C12D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3505503-3506353(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D12.5
Entrez Gene 182547 Entrez gene
SwissProt Q17922 EMBL-EBI
WormBase CE06817 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96081 Hypothetical protein C12D12.5 [Caenorhabditis elegans] ref|NP_508604.1| C12D12.5 [Caenorhabditis elegans] 1.0E-127
blast AAA96081 Hypothetical protein C12D12.5 [Caenorhabditis elegans] ref|NP_508604.1| C12D12.5 [Caenorhabditis elegans] 1.0E-111
blast AAA96081 Hypothetical protein C12D12.5 [Caenorhabditis elegans] ref|NP_508604.1| C12D12.5 [Caenorhabditis elegans] 1.0E-110
blast CAE68441 Hypothetical protein CBG14226 [Caenorhabditis briggsae] 3.0E-40
blast CAE68441 Hypothetical protein CBG14226 [Caenorhabditis briggsae] 1.0E-39
blast CAE68441 Hypothetical protein CBG14226 [Caenorhabditis briggsae] 6.0E-37
blast EAL31059 GA19209-PA [Drosophila pseudoobscura] 1.0E-23
blast EAL31059 GA19209-PA [Drosophila pseudoobscura] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 5.3E-12
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 9.8E-22
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 9.8E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040504 3 39-61,74-93,103-120
Sequence
Target Sequence 
>C. ELEGANS:184573_AT
gaccgaatctccaaacgtgatttcatctgttcaagcatcgacaattgctgacataatcgg
acattatgtgaatggaaactctatcaaagatgttgtgaattcttcacaaaaatcggcttc
acagccccgcactgcacgcgaaccacgcataaaaagaccaatgaatgcttttatggtaat
aaacgttcaaacatggaaaataaggaaatcaaatgattatattaaggtgtggtcgcaaca
acgtcgccaacaaattgcagcaacaggacagaaatttcacaactctgacatttcaaagat
gcttggagctgagtggcgaaaaatggaggagcacgagaaagttccttttgttgagcgcgc
aaagcaactccgcgaagagcatttcaatgcccatccagactacgtgtacagaccaagaag
aagaaagcgtgtcgagaagagcgctggtagtgtggacagcaacagtgcggatgagataac
taaacctgtaaacgtttataatagcagcacatacaccaatgtattcagtcaattgttttt
caagttgctttgtgatacccataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGAATCTCCAAACGTGATTTCA 685 381 117 Antisense
GATTTCATCTGTTCAAGCATCGACA 384 425 135 Antisense
TCTTCACAAAAATCGGCTTCACAGC 57 617 217 Antisense
CACTGCACGCGAACCACGCATAAAA 20 199 246 Antisense
GTCGCAACAACGTCGCCAACAAATT 550 473 348 Antisense
AGAAAGTTCCTTTTGTTGAGCGCGC 243 71 452 Antisense
TGAGCGCGCAAAGCAACTCCGCGAA 633 569 468 Antisense
AGAGCATTTCAATGCCCATCCAGAC 53 71 492 Antisense
CCCATCCAGACTACGTGTACAGACC 180 259 506 Antisense
GAGAAGAGCGCTGGTAGTGTGGACA 30 393 550 Antisense
CAAGTTGCTTTGTGATACCCATAAT 366 185 657 Antisense
Sequence Source Affymetrix Proprietary Database