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[184572_at]

Description Y57A10B.1 /REP_DB=WormBase Gene ID /WP=CE20322 /TR=Q9XWI0 /GB=CAA21688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 95      4grp_total > 03      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 793
1 2 3 4 range
A 374.2
(-1.5)
P 		235.7
(-2.6)
P 		179.2
(-3)
P 		972
(3)
P 		793
B 368.6
(-1.6)
P 		287.9
(-2.2)
P 		199.3
(-3)
P 		904.8
(3)
P 		706
C 339.4
(-1.9)
P 		203.9
(-3)
P 		217.2
(-2.9)
P 		952.6
(3)
P 		749
avr 360.7
(-1.7) 		242.5
(-2.6) 		198.6
(-3) 		943.1
(3) 		745

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 252.4
(-2.1)
P 		323.3
(1.1)
P 		231.5
(-3)
P 		315.7
(0.7)
P 		362.3
(2.8)
P 		366.7
(3)
P 		135
B 380.2
(0.6)
P 		248
(-3)
P 		307.8
(-1.4)
P 		358.3
(-0)
P 		471.3
(3)
P 		387.6
(0.8)
P 		223
C 413.4
(2.1)
P 		253.8
(-3)
P 		306.2
(-1.3)
P 		346.7
(-0.1)
P 		443.1
(3)
P 		438.1
(2.8)
P 		189
avr 348.7
(-0.1) 		275
(-3) 		281.8
(-2.7) 		340.2
(-0.4) 		425.6
(3) 		397.5
(1.9) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 136.3
(2.6)
P 		51.2
(-2.7)
P 		46.9
(-3)
P 		142.3
(3)
P 		95
B 117.5
(-0.1)
P 		71.1
(-2)
P 		46.2
(-3)
P 		192.8
(3)
P 		147
C 112.4
(0.2)
P 		58.6
(-3)
P 		75.7
(-2)
P 		160.6
(3)
P 		102
avr 122.1
(0.6) 		60.3
(-2.8) 		56.3
(-3) 		165.2
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 46.5
(-3)
P 		115
(3)
P 		50.4
(-2.7)
P 		80.1
(-0.1)
P 		109.3
(2.5)
P 		89.3
(0.7)
P 		69
B 132.3
(-0)
P 		82.6
(-2.6)
P 		74.7
(-3)
P 		94.9
(-2)
P 		191.5
(3)
P 		144.5
(0.6)
P 		117
C 153.2
(3)
P 		77.5
(-2.4)
P 		77.9
(-2.4)
P 		69.7
(-3)
P 		143.4
(2.3)
P 		146.7
(2.5)
P 		84
avr 110.7
(0.2) 		91.7
(-1.2) 		67.7
(-3) 		81.6
(-2) 		148.1
(3) 		126.8
(1.4) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4015
Sequence Type Exemplar sequence
Representative Public ID Y57A10B.1 NCBI
Target Description Y57A10B.1 /REP_DB=WormBase Gene ID /WP=CE20322 /TR=Q9XWI0 /GB=CAA21688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064223(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064223 NCBI Caenorhabditis elegans Y57A10B.1 (Y57A10B.1) mRNA, complete cds. 10/11 None
SNAP00000034310 ENSEMBL cdna:SNAP chromosome:CEL140:II:12358909:12364415:-1 9/11 None
GENEFINDER00000034321 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12358865:12382751:-1 11/11 None
Y57A10B.1 ENSEMBL cdna:known chromosome:CEL140:II:12358661:12366926:-1 gene:Y57A10B.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12358861-12366923(-) 98.21 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10B.1
Entrez Gene 174876 Entrez gene
SwissProt Q9XWI0 EMBL-EBI
WormBase CE35688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21688 Hypothetical protein Y57A10B.1 [Caenorhabditis elegans] ref|NP_496624.2| Y57A10B.1 [Caenorhabditis elegans] 0.0
blast CAE73485 Hypothetical protein CBG20937 [Caenorhabditis briggsae] 0.0
blast CAA21688 Hypothetical protein Y57A10B.1 [Caenorhabditis elegans] ref|NP_496624.2| Y57A10B.1 [Caenorhabditis elegans] 1.0E-165
blast CAE73485 Hypothetical protein CBG20937 [Caenorhabditis briggsae] 1.0E-136
blast CAA21689 Hypothetical protein Y57A10B.2 [Caenorhabditis elegans] ref|NP_496625.1| Y57A10B.2 [Caenorhabditis elegans] 3.0E-23
blast AAF39784 Hypothetical protein C53D5.2 [Caenorhabditis elegans] ref|NP_490710.2| C53D5.2 [Caenorhabditis elegans] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.9E-22
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.5E-15
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.9E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496624.2 2 274-296,380-402
Y57A10B.1 2 274-296,380-402
SNAP00000034310 2 110-132,216-238
GENEFINDER00000034321 3 19-41,516-538,622-644
Sequence
Target Sequence 
>C. ELEGANS:184572_AT
cgtagtgagtgatgtacctccggccgctccgccgtctctcacagcagtagcgacggcttc
agaagaatcatcagtaccgacagtggtgttaggtgccaggaaacgaattggtgatataac
ggttaatgcctcaacaaaagacgagtcttatcggcgagaagaagccgaaaatgtattgtc
aacggtgacgctgatcgcggcgatggtgtttttccttagctttttccttgcaatgtatgc
tcatgttaagtcgggtctttcattttgcggatatttgacactttgctggagttcgaatct
agaatggtcaattgaagagtacaagcactcaagggacacgcagtatctcaacaagttgga
ggaattgcgaaggaaaattaatgattcctgttttaattctttgttcttttatcggaattt
tcgtatattttcaaaatctatttttgaaaatgtacctagtacactcggtgtttgcgtact
ttcgaggctactaaaaacaaaagaaagccgccgacgaagtggaaccgctgcggagttctg
tgattgtgctcgagtaggcttatggtcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTAGTGAGTGATGTACCTCCGGCC 219 247 978 Antisense
GTCTCTCACAGCAGTAGCGACGGCT 588 469 1011 Antisense
TGTCAACGGTGACGCTGATCGCGGC 326 557 1154 Antisense
GCGATGGTGTTTTTCCTTAGCTTTT 428 289 1177 Antisense
TTAGCTTTTTCCTTGCAATGTATGC 6 671 1193 Antisense
AAGTCGGGTCTTTCATTTTGCGGAT 196 159 1225 Antisense
AGGGACACGCAGTATCTCAACAAGT 262 59 1309 Antisense
GATTCCTGTTTTAATTCTTTGTTCT 463 433 1360 Antisense
GAAAGCCGCCGACGAAGTGGAACCG 44 359 1480 Antisense
AACCGCTGCGGAGTTCTGTGATTGT 304 147 1500 Antisense
GTGCTCGAGTAGGCTTATGGTCCTT 84 479 1523 Antisense
Sequence Source Affymetrix Proprietary Database