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[184571_at]

Description C56C10.9 /REP_DB=WormBase Gene ID /WP=CE02574 /TR=Q18887 /GB=AAA68777.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 76      4grp_total > 05      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 145.9
(3)
P 		81.9
(-3)
A 		95.3
(-1.7)
A 		106
(-0.7)
A 		64
B 165
(-0.9)
P 		112.1
(-3)
P 		154.5
(-1.3)
A 		259.8
(3)
P 		148
C 150.1
(-1.4)
P 		103.4
(-3)
A 		110.7
(-2.8)
M 		280.2
(3)
P 		177
avr 153.7
(-0.2) 		99.1
(-3) 		120.2
(-1.9) 		215.3
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 137
(-3)
P 		165
(-2.4)
A 		307.3
(0.6)
P 		260.1
(-0.4)
P 		281
(0)
P 		421.3
(3)
P 		284
B 213.1
(-2)
P 		154.9
(-3)
P 		321.7
(-0)
P 		209.1
(-2)
P 		298.5
(-0.5)
P 		493
(3)
P 		338
C 203.1
(-3)
P 		220.3
(-2.7)
P 		215.8
(-2.8)
P 		353.2
(-0.6)
P 		212.5
(-2.8)
P 		574.4
(3)
P 		371
avr 184.4
(-2.9) 		180.1
(-3) 		281.6
(-1.1) 		274.1
(-1.2) 		264
(-1.4) 		496.2
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 53.1
(3)
P 		17.8
(-2.6)
A 		24.9
(-1.5)
A 		15.5
(-3)
A 		38
B 52.6
(2.4)
P 		27.7
(-3)
P 		35.8
(-1.2)
A 		55.4
(3)
P 		28
C 49.7
(3)
P 		29.7
(-3)
A 		38.6
(-0.3)
M 		47.2
(2.3)
P 		20
avr 51.8
(3) 		25.1
(-3) 		33.1
(-1.2) 		39.4
(0.2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 25.2
(-3)
P 		58.7
(-0.4)
A 		66.9
(0.2)
P 		66
(0.2)
P 		84.8
(1.6)
P 		102.6
(3)
P 		77
B 74.1
(-2)
P 		51.5
(-3)
P 		78.1
(-1.8)
P 		55.4
(-2.8)
P 		121.3
(0.2)
P 		183.8
(3)
P 		132
C 75.3
(-2.1)
P 		67.2
(-2.5)
P 		54.9
(-3)
P 		71
(-2.3)
P 		68.8
(-2.4)
P 		192.3
(3)
P 		137
avr 58.2
(-3) 		59.1
(-2.9) 		66.6
(-2.5) 		64.1
(-2.7) 		91.6
(-1) 		159.6
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4929
Sequence Type Exemplar sequence
Representative Public ID C56C10.9 NCBI
Target Description C56C10.9 /REP_DB=WormBase Gene ID /WP=CE02574 /TR=Q18887 /GB=AAA68777.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062937 NCBI Caenorhabditis elegans C56C10.9 (C56C10.9) mRNA, complete cds. 11/11 None
SNAP00000022066 ENSEMBL cdna:SNAP chromosome:CEL140:II:6591075:6592294:-1 11/11 None
GENEFINDER00000022081 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6591075:6592294:-1 11/11 None
C56C10.9 ENSEMBL cdna:known chromosome:CEL140:II:6591036:6592296:-1 gene:C56C10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6591071-6592291(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56C10.9
Entrez Gene 183859 Entrez gene
SwissProt Q18887 EMBL-EBI
WormBase CE02574 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586207_AT similar to stromal cell derived factor 4 cfa
CANINE_2:CFA.554.1.S1_AT similar to stromal cell derived factor 4 cfa
CANINE_2:CFA.554.2.S1_AT similar to stromal cell derived factor 4 cfa
CANINE_2:CFA.554.2.S1_X_AT similar to stromal cell derived factor 4 cfa
CANINE_2:CFAAFFX.29512.1.S1_S_AT similar to stromal cell derived factor 4 cfa
DROSOPHILA_2:1629277_AT dm
DROSGENOME1:152285_AT dm
DROSGENOME1:150183_AT dm
CHICKEN:GGAAFFX.1230.1.S1_S_AT stromal cell derived factor 4 gga
HG-U133A:217855_X_AT stromal cell derived factor 4 hs
HG-U133_PLUS_2:217855_X_AT stromal cell derived factor 4 hs
HG-U133A_2:217855_X_AT stromal cell derived factor 4 hs
HG-U133_PLUS_2:224472_X_AT stromal cell derived factor 4 hs
HG-U133B:224472_X_AT stromal cell derived factor 4 hs
HG-U133_PLUS_2:221972_S_AT stromal cell derived factor 4 hs
HG-U133A_2:221972_S_AT stromal cell derived factor 4 hs
HG-FOCUS:221972_S_AT stromal cell derived factor 4 hs
HG-U133A:221972_S_AT stromal cell derived factor 4 hs
U133_X3P:G7706572_3P_S_AT stromal cell derived factor 4 hs
U133_X3P:G13623226_3P_S_AT stromal cell derived factor 4 hs
U133_X3P:HS.42806.2.S1_3P_S_AT stromal cell derived factor 4 hs
U133_X3P:HS.42806.1.S1_3P_S_AT stromal cell derived factor 4 hs
U133_X3P:232032_3P_X_AT stromal cell derived factor 4 hs
U133_X3P:224472_3P_X_AT stromal cell derived factor 4 hs
U133_X3P:221972_3P_S_AT stromal cell derived factor 4 hs
U133_X3P:217855_3P_X_AT stromal cell derived factor 4 hs
HG-U133_PLUS_2:232032_X_AT stromal cell derived factor 4 hs
HG-U133B:232032_X_AT stromal cell derived factor 4 hs
HG-U95C:57041_S_AT stromal cell derived factor 4 hs
HG-U95C:65879_AT stromal cell derived factor 4 hs
HU35KSUBC:RC_AA461453_AT Stromal cell derived factor 4 hs
MU11KSUBA:U45977_S_AT stromal cell derived factor 4 mm
MG-U74BV2:116904_AT stromal cell derived factor 4 mm
MG-U74AV2:160390_AT stromal cell derived factor 4 mm
MG-U74CV2:167135_R_AT stromal cell derived factor 4 mm
MOE430A:1426393_A_AT stromal cell derived factor 4 mm
MOUSE430A_2:1426393_A_AT stromal cell derived factor 4 mm
MOUSE430_2:1426393_A_AT stromal cell derived factor 4 mm
MOE430A:1448367_AT stromal cell derived factor 4 mm
MOUSE430A_2:1448367_AT stromal cell derived factor 4 mm
MOUSE430_2:1448367_AT stromal cell derived factor 4 mm
MOE430B:1455584_AT stromal cell derived factor 4 mm
MOUSE430_2:1455584_AT stromal cell derived factor 4 mm
MG-U74BV2:105430_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MOE430B:1440340_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MOUSE430_2:1440340_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MU19KSUBA:TC18182_S_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MU19KSUBB:TC28582_S_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MU19KSUBB:TC32676_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
MU19KSUBC:TC35793_S_AT Stromal cell derived factor 4 (Sdf4), mRNA mm
RG-U34B:RC_AA997861_AT stromal cell derived factor 4 rn
RAE230A:1387778_AT stromal cell derived factor 4 rn
RAT230_2:1387778_AT stromal cell derived factor 4 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68777 Hypothetical protein C56C10.9 [Caenorhabditis elegans] ref|NP_495338.1| C56C10.9 [Caenorhabditis elegans] 1.0E-164
blast CAE60665 Hypothetical protein CBG04318 [Caenorhabditis briggsae] 1.0E-130
blast AAH80996 Sdf4 protein [Xenopus laevis] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.6E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.012
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.023
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.47
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.018
Sequence
Target Sequence 
>C. ELEGANS:184571_AT
ggaagagttcgagccacatttcagcaaaatgcatgagaaagatcatagcgattcagaact
gatggatgtacacacagaagatccacaccgtgttgatgatgagaaacgtatgttcaatcg
atcagatatcactcgtgacggaagattagacagaatggaatggcatatctttttgcaccc
agaatactcagcacagggtctcgtggaaattgtaaatgatctcatgggtgtatatgataa
aaataacgacgaagttgtgagtcaagatgacttcgtgaacggaattcctggaaccgttga
tgaattgaatccagaatttgagaacatggagaaattagaaaaagaaagaaggttgcgcga
atttaatgaagaaatcgacgaaaattctgacggaaaagcaacttttcgagaactttatga
ttacgttgatccacagaacttccgacttgcttcgaaggaagtgaacgatataatgatgct
gaccgatgccaacaatgacgagaaactgtcgctcgaagaattgcttgaaagagattggct
ccttgctcgatctagcttgttgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAGTTCGAGCCACATTTCAGC 234 531 381 Antisense
CACAGAAGATCCACACCGTGTTGAT 446 195 453 Antisense
ATCGATCAGATATCACTCGTGACGG 543 35 497 Antisense
ATATCTTTTTGCACCCAGAATACTC 289 19 545 Antisense
AATACTCAGCACAGGGTCTCGTGGA 403 171 563 Antisense
GATTACGTTGATCCACAGAACTTCC 258 429 799 Antisense
CACAGAACTTCCGACTTGCTTCGAA 120 195 812 Antisense
GATGCTGACCGATGCCAACAATGAC 469 413 855 Antisense
ACTGTCGCTCGAAGAATTGCTTGAA 178 97 885 Antisense
GAAAGAGATTGGCTCCTTGCTCGAT 604 359 907 Antisense
CCTTGCTCGATCTAGCTTGTTGTCG 349 269 921 Antisense
Sequence Source Affymetrix Proprietary Database