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[184570_s_at]

Description W09G12.4 /REP_DB=WormBase Gene ID /WP=CE18343 /TR=O45201 /GB=AAC04450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 19      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 44
(-0.7)
A 		54
(0.1)
A 		13.2
(-3)
A 		91.9
(3)
A 		79
B 4.3
(-3)
A 		66.9
(1.8)
A 		30.6
(-1)
A 		83.1
(3)
A 		79
C 39.5
(-0.3)
A 		42.3
(-0.1)
A 		4.7
(-3)
A 		82.9
(3)
A 		78
avr 29.3
(-1.9) 		54.4
(0.3) 		16.2
(-3) 		86
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 104.4
(0.2)
A 		27
(-3)
A 		52.3
(-2)
A 		49.2
(-2.1)
A 		103.8
(0.1)
A 		174.2
(3)
P 		147
B 50.7
(-2.4)
A 		38.5
(-3)
A 		70.9
(-1.5)
A 		37.5
(-3)
A 		39.6
(-2.9)
P 		168.6
(3)
P 		131
C 23.8
(-2.9)
A 		69.2
(-1.4)
A 		46.1
(-2.2)
A 		22.2
(-3)
A 		51.4
(-2)
A 		193.7
(3)
P 		172
avr 59.6
(-2) 		44.9
(-2.6) 		56.4
(-2.2) 		36.3
(-3) 		64.9
(-1.8) 		178.8
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16
(3)
A 		11.7
(1)
A 		3.4
(-3)
A 		13.5
(1.8)
A 		13
B 1.4
(-3)
A 		16.5
(2.6)
A 		7.1
(-0.9)
A 		17.7
(3)
A 		16
C 13.1
(2.6)
A 		12.2
(2.1)
A 		1.6
(-3)
A 		14
(3)
A 		12
avr 10.2
(0.4) 		13.5
(2.1) 		4
(-3) 		15.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 19.2
(-1.2)
A 		9.6
(-3)
A 		11.4
(-2.7)
A 		12.5
(-2.5)
A 		31.3
(1)
A 		42.4
(3)
P 		33
B 17.6
(-2.1)
A 		12.8
(-2.7)
A 		17.2
(-2.2)
A 		9.9
(-3)
A 		16.1
(-2.3)
P 		62.9
(3)
P 		53
C 8.8
(-2.6)
A 		21.1
(-1.3)
A 		11.7
(-2.3)
A 		4.5
(-3)
A 		16.6
(-1.8)
A 		64.8
(3)
P 		60
avr 15.2
(-2.2) 		14.5
(-2.3) 		13.4
(-2.4) 		9
(-3) 		21.3
(-1.5) 		56.7
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184570_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10590
Sequence Type Exemplar sequence
Representative Public ID W09G12.4 NCBI
Target Description W09G12.4 /REP_DB=WormBase Gene ID /WP=CE18343 /TR=O45201 /GB=AAC04450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067653 NCBI Caenorhabditis elegans Delta/Serrate/Lag-2 domain family member (dsl-1) (dsl-1) mRNA, complete cds. 11/11 None
SNAP00000042739 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1205540:1208008:-1 11/11 None
GENEFINDER00000042748 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1205540:1211946:-1 11/11 None
W09G12.4 ENSEMBL cdna:known chromosome:CEL140:IV:1207255:1208068:-1 gene:W09G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1207260-1208074(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dsl-1
Ensembl W09G12.4
Entrez Gene 176939 Entrez gene
SwissProt O45201 EMBL-EBI
WormBase CE18343 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500054 Delta/Serrate/Lag-2 domain family member (dsl-1) [Caenorhabditis elegans] gb|AAC04450.1| Delta/serrate/lag-2 domain protein 1 [Caenorhabditis elegans] 1.0E-151
blast NP_500054 Delta/Serrate/Lag-2 domain family member (dsl-1) [Caenorhabditis elegans] gb|AAC04450.1| Delta/serrate/lag-2 domain protein 1 [Caenorhabditis elegans] 1.0E-140
blast CAE72757 Hypothetical protein CBG20006 [Caenorhabditis briggsae] 2.0E-67
blast CAE72757 Hypothetical protein CBG20006 [Caenorhabditis briggsae] 8.0E-67
blast CAE72757 Hypothetical protein CBG20006 [Caenorhabditis briggsae] 3.0E-62
blast C88637 protein W09G12.3 [imported] - Caenorhabditis elegans 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-11
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-11
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042748 1 152-174
Sequence
Target Sequence 
>C. ELEGANS:184570_S_AT
cattcaatctccaacttaagcccaatagagtgggatttgtgtccaatattcctgtaaagt
tcggaagaccgggattagtgttggtggattgcagtcctgtcgaaaaatttcaaatccatc
gtgttacattgcgttcgatacggtggaatacccatgtgaggagtgtggcttcggacaata
tattcttgccatttacgggattccgctatgatatcaagtgtaatagatattggcatggcc
ttcactgcgaccacttttgcaatgacgactttgcccgtacaattaacaggcggtgcacac
aaaacggaactctcggctgcctagaaggattccacggacctaattgcgaacttcctgttc
ctgcagattcctgcaagtgtcaaaacgggggaaagtgtgtctcaagcctcgaaaatacat
gggctcagaacggctctctaatttgtgaatgtcgtttgggacattttgaaggaaaacact
gtgagaagaaatcgttcaactactttccaaagatcgaagcaactacgtatgccacgaagg
attctcatttggcacgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCAATCTCCAACTTAAGCCCAA 613 215 158 Antisense
GTTGGTGGATTGCAGTCCTGTCGAA 258 435 237 Antisense
AATCCATCGTGTTACATTGCGTTCG 666 167 270 Antisense
ATTCTTGCCATTTACGGGATTCCGC 620 9 339 Antisense
GCGACCACTTTTGCAATGACGACTT 188 289 404 Antisense
GGAACTCTCGGCTGCCTAGAAGGAT 495 529 463 Antisense
GGATTCCACGGACCTAATTGCGAAC 295 507 484 Antisense
TAATTGCGAACTTCCTGTTCCTGCA 598 633 498 Antisense
GAAAGTGTGTCTCAAGCCTCGAAAA 486 361 548 Antisense
GGCTCAGAACGGCTCTCTAATTTGT 314 539 579 Antisense
CGAAGGATTCTCATTTGGCACGCCA 209 253 692 Antisense
Sequence Source Affymetrix Proprietary Database