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[184569_at]

Description W08A12.4 /REP_DB=WormBase Gene ID /WP=CE14702 /TR=O01622 /GB=AAB52322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 2.1
(-3)
A 		0.8
(-3)
A 		5.2
(-2.9)
A 		254.1
(3)
P 		253
B 7.8
(-2.8)
A 		1.6
(-3)
A 		4.7
(-2.9)
A 		230
(3)
P 		228
C 4.6
(-3)
A 		3.9
(-3)
A 		5.3
(-2.9)
A 		157.4
(3)
P 		154
avr 4.8
(-2.9) 		2.1
(-3) 		5.1
(-2.9) 		213.8
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 5.3
(-3)
A 		19.5
(-2.7)
A 		62.7
(-1.9)
A 		83.6
(-1.5)
A 		202.5
(0.8)
P 		312.7
(3)
P 		307
B 27.7
(-2.7)
A 		10.9
(-3)
A 		46.4
(-2.5)
A 		61.8
(-2.2)
P 		188.7
(-0.3)
P 		402.8
(3)
P 		392
C 35.5
(-3)
A 		47.7
(-2.7)
A 		41.9
(-2.8)
A 		122.3
(-0.8)
P 		180.6
(0.7)
P 		272.8
(3)
P 		237
avr 22.8
(-3) 		26
(-2.9) 		50.3
(-2.5) 		89.2
(-1.7) 		190.6
(0.3) 		329.4
(3) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 0.8
(-2.9)
A 		0.2
(-3)
A 		1.4
(-2.8)
A 		37.2
(3)
P 		37
B 2.5
(-2.7)
A 		0.4
(-3)
A 		1.1
(-2.9)
A 		49
(3)
P 		49
C 1.5
(-2.9)
A 		1.1
(-3)
A 		1.9
(-2.8)
A 		26.5
(3)
P 		25
avr 1.6
(-2.8) 		0.6
(-3) 		1.5
(-2.9) 		37.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 1
(-3)
A 		6.9
(-2.5)
A 		13.7
(-2)
A 		21.2
(-1.4)
A 		61.1
(1.8)
P 		76.1
(3)
P 		75
B 9.6
(-2.8)
A 		3.6
(-3)
A 		11.3
(-2.7)
A 		16.4
(-2.5)
P 		76.7
(-0)
P 		150.2
(3)
P 		147
C 13.2
(-2.8)
A 		14.6
(-2.7)
A 		10.7
(-3)
A 		24.6
(-2)
P 		58.4
(0.6)
P 		91.3
(3)
P 		81
avr 7.9
(-3) 		8.4
(-3) 		11.9
(-2.8) 		20.7
(-2.2) 		65.4
(0.5) 		105.9
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14868
Sequence Type Exemplar sequence
Representative Public ID W08A12.4 NCBI
Target Description W08A12.4 /REP_DB=WormBase Gene ID /WP=CE14702 /TR=O01622 /GB=AAB52322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071625 NCBI Caenorhabditis elegans W08A12.4 (W08A12.4) mRNA, complete cds. 11/11 None
SNAP00000004991 ENSEMBL cdna:SNAP chromosome:CEL140:V:3673740:3676447:1 11/11 None
GENEFINDER00000004996 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3673195:3676447:1 11/11 None
W08A12.4 ENSEMBL cdna:known chromosome:CEL140:V:3674430:3676447:1 gene:W08A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3674429-3676447(+) 99.9 100.0
Public Domain and Genome References
Gene Title
Ensembl W08A12.4
Entrez Gene 189288 Entrez gene
SwissProt O01622 EMBL-EBI
WormBase CE14702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52322 Hypothetical protein W08A12.4 [Caenorhabditis elegans] ref|NP_504026.1| W08A12.4 [Caenorhabditis elegans] 0.0
blast AAB52322 Hypothetical protein W08A12.4 [Caenorhabditis elegans] ref|NP_504026.1| W08A12.4 [Caenorhabditis elegans] 1.0E-177
blast AAB52322 Hypothetical protein W08A12.4 [Caenorhabditis elegans] ref|NP_504026.1| W08A12.4 [Caenorhabditis elegans] 1.0E-144
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 3.0E-37
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 6.0E-37
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 3.0E-30
blast CAE75489 Hypothetical protein CBG23493 [Caenorhabditis briggsae] 6.0E-29
blast CAA99798 Hypothetical protein C54D10.8 [Caenorhabditis elegans] ref|NP_506121.2| C54D10.8 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:184569_AT
gcaagcccaagaagagcataccctccgccgccagaaaatcgatgaggaatttgaggaaaa
atgtcagaaattgaatgaggaagcacagcaaagacagagggaaatgaatcggcaatttga
agaaattaagaaaattatgcagatgagagtttggaatgatacaattgaaagaaattggac
gaataggttgaatgaagcaaggtctgccaataaagactcgcagatattggagcaccggtg
cctggtctccagtccacgacctacagatatagaagaatggaagcacgttctgcaaatttt
gctaaaaaatatggaaaatgaatcttcaaatatgtcggtgatgtatgataacaccaacaa
atcgtttttacttgatattcagaaagcggtcgacgagatttctttttcatgtgcttgttt
gctgagagagctcgatcatggagcaaacttgacgaagctgacaaatttaactggaaaatt
gaacagagcttgcatgaatattccgacgctagccgagctgaaacgaaactactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGCCCAAGAAGAGCATACCCTC 293 321 453 Antisense
GCAAGGTCTGCCAATAAAGACTCGC 502 321 649 Antisense
GATATTGGAGCACCGGTGCCTGGTC 638 425 675 Antisense
CTCCAGTCCACGACCTACAGATATA 36 237 699 Antisense
TGGAAGCACGTTCTGCAAATTTTGC 31 547 730 Antisense
AGCGGTCGACGAGATTTCTTTTTCA 225 81 837 Antisense
TTCTTTTTCATGTGCTTGTTTGCTG 139 691 852 Antisense
GTTTGCTGAGAGAGCTCGATCATGG 349 451 869 Antisense
AGAGCTTGCATGAATATTCCGACGC 608 69 937 Antisense
TATTCCGACGCTAGCCGAGCTGAAA 486 663 951 Antisense
AGCCGAGCTGAAACGAAACTACTAC 234 83 963 Antisense
Sequence Source Affymetrix Proprietary Database