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[184568_at]

Description Y48G10A.2 /REP_DB=WormBase Gene ID /WP=CE25313 /TR=Q9U284 /GB=CAB63371.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 11      6grp_total > 86      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 214.5
(2.2)
A 		175.9
(0.1)
M 		118.8
(-3)
A 		229.8
(3)
A 		111
B 192.8
(0.4)
P 		162.6
(-3)
P 		187.6
(-0.2)
A 		215.6
(3)
P 		53
C 201.2
(-0.4)
P 		153.1
(-2.9)
A 		151.7
(-3)
P 		267.5
(3)
P 		116
avr 202.8
(0.5) 		163.9
(-2.2) 		152.7
(-3) 		237.6
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 212.9
(-1.4)
A 		133
(-3)
M 		173.4
(-2.2)
P 		263
(-0.4)
P 		261.1
(-0.4)
P 		431.4
(3)
P 		298
B 122.2
(-3)
P 		120.7
(-3)
A 		164.4
(-2.3)
A 		277.3
(-0.6)
P 		291.7
(-0.4)
P 		509.8
(3)
P 		389
C 137.2
(-3)
P 		157.9
(-2.7)
A 		184.4
(-2.3)
P 		244.3
(-1.4)
P 		247.6
(-1.3)
P 		531.1
(3)
P 		394
avr 157.4
(-2.7) 		137.2
(-3) 		174.1
(-2.4) 		261.5
(-0.9) 		266.8
(-0.8) 		490.8
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 78.1
(3)
A 		38.2
(-2.1)
M 		31.1
(-3)
A 		33.6
(-2.7)
A 		47
B 61.5
(3)
P 		40.1
(-3)
P 		43.5
(-2)
A 		46
(-1.3)
P 		21
C 66.6
(3)
P 		44
(-3)
A 		52.9
(-0.6)
P 		45.1
(-2.7)
P 		23
avr 68.7
(3) 		40.8
(-3) 		42.5
(-2.6) 		41.6
(-2.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 39.3
(-2.9)
A 		47.3
(-2.2)
M 		37.8
(-3)
P 		66.7
(-0.4)
P 		78.8
(0.7)
P 		105
(3)
P 		67
B 42.5
(-2.9)
P 		40.2
(-3)
A 		39.9
(-3)
A 		73.4
(-1.7)
P 		118.5
(0.1)
P 		190.1
(3)
P 		150
C 50.9
(-2.8)
P 		48.2
(-2.9)
A 		46.9
(-3)
P 		49.1
(-2.9)
P 		80.1
(-1.5)
P 		177.8
(3)
P 		131
avr 44.2
(-2.9) 		45.2
(-2.8) 		41.5
(-3) 		63.1
(-1.9) 		92.5
(-0.4) 		157.6
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1444
Sequence Type Exemplar sequence
Representative Public ID Y48G10A.2 NCBI
Target Description Y48G10A.2 /REP_DB=WormBase Gene ID /WP=CE25313 /TR=Q9U284 /GB=CAB63371.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060969 NCBI Caenorhabditis elegans Y48G10A.2 (Y48G10A.2) mRNA, complete cds. 11/11 A 
SNAP00000010014 ENSEMBL cdna:SNAP chromosome:CEL140:I:13463641:13496537:-1 11/11 None
GENEFINDER00000010017 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13485500:13497045:-1 11/11 None
Y48G10A.2 ENSEMBL cdna:known chromosome:CEL140:I:13485451:13495530:-1 gene:Y48G10A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13488081-13495360(-) 98.23 98.23
Public Domain and Genome References
Gene Title
Ensembl Y48G10A.2
Entrez Gene 173218 Entrez gene
SwissProt Q9U284 EMBL-EBI
WormBase CE25313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 0.0
blast CAB63373 Hypothetical protein Y48G10A.4 [Caenorhabditis elegans] ref|NP_493368.1| Y48G10A.4 [Caenorhabditis elegans] 0.0
blast CAE63537 Hypothetical protein CBG08018 [Caenorhabditis briggsae] 0.0
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 1.0E-56
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 5.0E-55
blast AAA79349 Hypothetical protein F09E5.9 [Caenorhabditis elegans] ref|NP_494999.1| F09E5.9 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 9.8E-42
Pfam IPR004142 EMBL-EBI Ndr family 6.5E-122
Sequence
Target Sequence 
>C. ELEGANS:184568_AT
atggcattcacgtcattgtatggtcaatgaaatgttgagtacgatcaaatataatcgtga
acaaggaatcgattatttgagaaagcaatccgagaaagtgatgacccttctaaataatgc
tgctcaagagatcaaaagtgtttcgagaactcttccaaaacagttaaccaatcaggataa
gccacacacttcgttcggtcgccgccaacacgcatctcagaagaataccgaatgggccaa
tgaagaatattctccattctcgtcaacttgctctgagagctctacgagcactcttcacat
ggcaaaagctcttcaaagtgttgatgatgaggttactggtggattcggaggatttggatt
cggatttggtgcgtccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCATTCACGTCATTGTATGGTC 301 53 540 Antisense
GACCCTTCTAAATAATGCTGCTCAA 180 381 642 Antisense
GTGTTTCGAGAACTCTTCCAAAACA 567 485 677 Antisense
TCAGGATAAGCCACACACTTCGTTC 32 623 711 Antisense
CCGCCAACACGCATCTCAGAAGAAT 71 263 741 Antisense
AGAATATTCTCCATTCTCGTCAACT 523 75 783 Antisense
TCTCGTCAACTTGCTCTGAGAGCTC 513 609 797 Antisense
TGAGAGCTCTACGAGCACTCTTCAC 397 567 813 Antisense
GCACTCTTCACATGGCAAAAGCTCT 507 315 827 Antisense
GATGATGAGGTTACTGGTGGATTCG 436 411 862 Antisense
TGGATTCGGATTTGGTGCGTCCGCT 379 551 894 Antisense
Sequence Source Affymetrix Proprietary Database