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[184567_s_at]

Description Y48G10A.4 /REP_DB=WormBase Gene ID /WP=CE25315 /TR=Q9U282 /GB=CAB63373.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 52      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 75.4
(-0.9)
P 		137.2
(3)
A 		99.4
(0.6)
A 		42.6
(-3)
A 		95
B 111
(3)
M 		104.5
(2.3)
A 		92.1
(0.8)
A 		58.6
(-3)
A 		52
C 119.7
(1.5)
P 		129
(3)
P 		111.3
(0.2)
P 		91.4
(-3)
A 		38
avr 102
(0.8) 		123.6
(3) 		100.9
(0.7) 		64.2
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 98.4
(2.4)
A 		100.1
(2.6)
P 		71.9
(-0.4)
A 		94.4
(2)
A 		48
(-3)
A 		104.1
(3)
P 		56
B 69.7
(-1.3)
P 		92.9
(2.7)
P 		60.1
(-3)
A 		66.6
(-1.9)
P 		79.1
(0.3)
P 		94.8
(3)
P 		35
C 106
(3)
P 		78.5
(-0.6)
A 		72.5
(-1.4)
A 		60.2
(-3)
A 		105.9
(3)
P 		89.6
(0.9)
P 		46
avr 91.4
(2) 		90.5
(1.8) 		68.2
(-3) 		73.7
(-1.8) 		77.7
(-1) 		96.2
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.5
(2.4)
P 		29.8
(3)
A 		26
(2)
A 		6.2
(-3)
A 		24
B 35.4
(3)
M 		25.8
(0.5)
A 		21.3
(-0.7)
A 		12.5
(-3)
A 		23
C 39.6
(3)
P 		37.1
(2.4)
P 		38.8
(2.8)
P 		15.4
(-3)
A 		24
avr 34.2
(3) 		30.9
(2.1) 		28.7
(1.6) 		11.4
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 18.1
(-2)
A 		35.6
(3)
P 		15.7
(-2.7)
A 		23.9
(-0.3)
A 		14.5
(-3)
A 		25.3
(0.1)
P 		21
B 24.3
(-0.2)
P 		30.9
(1.7)
P 		14.6
(-3)
A 		17.6
(-2.1)
P 		32.1
(2)
P 		35.4
(3)
P 		21
C 39.3
(3)
P 		24
(-0.4)
A 		18.5
(-1.6)
A 		12.1
(-3)
A 		34.3
(1.9)
P 		30
(0.9)
P 		27
avr 27.2
(1.7) 		30.2
(3) 		16.3
(-3) 		17.9
(-2.3) 		27
(1.6) 		30.2
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184567_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1236
Sequence Type Exemplar sequence
Representative Public ID Y48G10A.4 NCBI
Target Description Y48G10A.4 /REP_DB=WormBase Gene ID /WP=CE25315 /TR=Q9U282 /GB=CAB63373.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060967 NCBI Caenorhabditis elegans Y48G10A.4 (Y48G10A.4) mRNA, complete cds. 11/11 None
SNAP00000010014 ENSEMBL cdna:SNAP chromosome:CEL140:I:13463641:13496537:-1 11/11 None
GENEFINDER00000010020 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13467070:13474848:-1 11/11 None
Y48G10A.4 ENSEMBL cdna:known chromosome:CEL140:I:13468686:13478470:-1 gene:Y48G10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13468616-13478401(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G10A.4
Entrez Gene 173216 Entrez gene
SwissProt Q9U282 EMBL-EBI
WormBase CE25315 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63373 Hypothetical protein Y48G10A.4 [Caenorhabditis elegans] ref|NP_493368.1| Y48G10A.4 [Caenorhabditis elegans] 0.0
blast CAE63537 Hypothetical protein CBG08018 [Caenorhabditis briggsae] 0.0
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 9.8E-42
Pfam IPR004142 EMBL-EBI Ndr family 6.5E-122
Sequence
Target Sequence 
>C. ELEGANS:184567_S_AT
gatacaggtgccggcgattattgtgaatcagcaattcgcatgggaacgacactcgttgga
gagggatttcgcgcagactcagctcatttttaattccgatcattttgtgccgaatgatta
tagtgctggaatgattaatgaggtaatggatttgggaagtgtatgtctcggcctaatgat
caacattggcgatgctcaatcggtgttggagaagggtggacaattatcaatggaacgttt
caagtcggtaccgattgctcgaatgttcggtgcctacctcgtcaactactcggatccggc
aacacgtaaaaagtgtgccgatggcttctggcgtacagtaacccaacgactacttgaagc
ccaaccgccacgtggatttcggcggggaaacgaggtggaacaggcgttgctagtgacacg
gaaagagttggccgacctatttcatttgttctcgctaattcgagaccaacgagttgtcga
tttcttgctcgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAGGTGCCGGCGATTATTGTG 459 423 1731 Antisense
GTTGGAGAGGGATTTCGCGCAGACT 707 435 1785 Antisense
GACTCAGCTCATTTTTAATTCCGAT 673 371 1806 Antisense
TTGCTCGAATGTTCGGTGCCTACCT 415 701 1985 Antisense
TCGTCAACTACTCGGATCCGGCAAC 131 605 2009 Antisense
AAAGTGTGCCGATGGCTTCTGGCGT 415 121 2040 Antisense
GGCTTCTGGCGTACAGTAACCCAAC 586 535 2053 Antisense
TAACCCAACGACTACTTGAAGCCCA 678 635 2069 Antisense
AGAGTTGGCCGACCTATTTCATTTG 242 67 2154 Antisense
ATTTCATTTGTTCTCGCTAATTCGA 106 15 2169 Antisense
CGAGTTGTCGATTTCTTGCTCGCCT 47 251 2200 Antisense
Sequence Source Affymetrix Proprietary Database