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[184566_s_at]

Description F29B9.11 /REP_DB=WormBase Gene ID /WP=CE09789 /TR=Q9GYI1 /GB=AAF99918.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 17      6grp_total > 52      4grp_total > 41      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4610
1 2 3 4 range
A 11576.7
(-3)
P 		15857.8
(2.6)
P 		16187
(3)
P 		13035.5
(-1.1)
P 		4610
B 11932.4
(-3)
P 		14722.4
(0.9)
P 		16177.6
(3)
P 		13533.3
(-0.7)
P 		4245
C 11601
(-3)
P 		14673.8
(3)
P 		13550.7
(0.8)
P 		11884.2
(-2.4)
P 		3073
avr 11703.4
(-3) 		15084.7
(2.6) 		15305.1
(3) 		12817.7
(-1.1) 		3602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7423
1 2 3 4 5 6 range
A 11599.4
(-0.9)
P 		10865.7
(-1.7)
P 		15044.8
(3)
P 		11241.4
(-1.3)
P 		10831.8
(-1.8)
P 		9729.8
(-3)
P 		5315
B 11535.2
(-1.6)
P 		12108.2
(-1.1)
P 		17152.9
(3)
P 		12999.1
(-0.4)
P 		11199.6
(-1.9)
P 		9821.6
(-3)
P 		7331
C 9760.1
(-3)
P 		11950.7
(1.2)
P 		12909.8
(3)
P 		12074.6
(1.4)
P 		10207.5
(-2.1)
P 		11009.8
(-0.6)
P 		3150
avr 10964.9
(-2) 		11641.5
(-1.2) 		15035.8
(3) 		12105
(-0.6) 		10746.3
(-2.3) 		10187.1
(-3) 		4849
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2815
1 2 3 4 range
A 4215.1
(3)
P 		3442.3
(1)
P 		4231.6
(3)
P 		1908.1
(-3)
P 		2324
B 3805.2
(3)
P 		3636.1
(1.9)
P 		3748.7
(2.6)
P 		2884
(-3)
P 		921
C 3840.2
(1.1)
P 		4218.8
(1.9)
P 		4722.9
(3)
P 		2003.9
(-3)
P 		2719
avr 3953.5
(2.1) 		3765.7
(1.6) 		4234.4
(3) 		2265.3
(-3) 		1969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2412
1 2 3 4 5 6 range
A 2138.2
(-3)
P 		3864.4
(3)
P 		3276.4
(1)
P 		2851.1
(-0.5)
P 		3268.6
(0.9)
P 		2368.9
(-2.2)
P 		1726
B 4013.7
(0.1)
P 		4030.3
(0.2)
P 		4165.2
(0.9)
P 		3443
(-3)
P 		4550.3
(3)
P 		3662.4
(-1.8)
P 		1107
C 3617.7
(2.7)
P 		3646.5
(2.8)
P 		3285.8
(1.1)
P 		2428.2
(-3)
P 		3303
(1.2)
P 		3685.6
(3)
P 		1257
avr 3256.5
(-0.8) 		3847.1
(3) 		3575.8
(1.3) 		2907.4
(-3) 		3707.3
(2.1) 		3239
(-0.9) 		940
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10888
Sequence Type Exemplar sequence
Representative Public ID F29B9.11 NCBI
Target Description F29B9.11 /REP_DB=WormBase Gene ID /WP=CE09789 /TR=Q9GYI1 /GB=AAF99918.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068208 NCBI Caenorhabditis elegans F29B9.11 (F29B9.11) mRNA, complete cds. 11/11 None
SNAP00000034768 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4659687:4660191:-1 11/11 None
GENEFINDER00000034777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4659687:4660191:-1 11/11 None
F29B9.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:4659544:4660192:-1 gene:F29B9.11 11/11 None
F29B9.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:4659551:4660194:-1 gene:F29B9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4659692-4660197(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.11
Entrez Gene 177231 Entrez gene
SwissProt Q9GYI1 EMBL-EBI
WormBase CE09789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500609 F29B9.11 [Caenorhabditis elegans] gb|AAF99918.1| Hypothetical protein F29B9.11 [Caenorhabditis elegans] 2.0E-42
blast CAE58563 Hypothetical protein CBG01726 [Caenorhabditis briggsae] 4.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500609.1 1 39-58
F29B9.11.1 1 39-58
F29B9.11.2 1 39-58
SNAP00000034768 1 39-58
GENEFINDER00000034777 1 39-58
Sequence
Target Sequence 
>C. ELEGANS:184566_S_AT
tgtgctctccttggctagaagccaacatgtcatccgtcgctcgcttcacaagggagttga
ctcgaccccaccactccgtttcacctctgtcagcgagaaggttgccctttacggactcat
ctgcgtcgctttcatggcatacccaacttccgtcctcttcagacttgatagtcttcgccc
aagaccggataatgctctctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCTCTCCTTGGCTAGAAGCCAA 352 557 27 Antisense
GCTAGAAGCCAACATGTCATCCGTC 286 303 40 Antisense
GTCGCTCGCTTCACAAGGGAGTTGA 385 475 62 Antisense
GCTCGCTTCACAAGGGAGTTGACTC 354 297 65 Antisense
CGTTTCACCTCTGTCAGCGAGAAGG 205 247 103 Antisense
CTCTGTCAGCGAGAAGGTTGCCCTT 437 227 111 Antisense
AGAAGGTTGCCCTTTACGGACTCAT 214 25 122 Antisense
CTTCCGTCCTCTTCAGACTTGATAG 639 219 173 Antisense
GACTTGATAGTCTTCGCCCAAGACC 344 367 188 Antisense
TCTTCGCCCAAGACCGGATAATGCT 334 617 198 Antisense
CCAAGACCGGATAATGCTCTCTCCC 232 277 205 Antisense
Sequence Source Affymetrix Proprietary Database