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[184565_at]

Description C18A11.4 /REP_DB=WormBase Gene ID /WP=CE04035 /TR=Q18065 /GB=AAC69008.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 17.4
(-3)
A 		133.8
(3)
A 		117.3
(2.1)
A 		26.9
(-2.5)
A 		116
B 15.7
(-2.7)
A 		140.5
(3)
A 		108.6
(1.5)
A 		9.4
(-3)
A 		131
C 8.6
(-3)
A 		49
(-0.9)
A 		121.4
(3)
A 		112.3
(2.5)
A 		113
avr 13.9
(-3) 		107.8
(2.5) 		115.8
(3) 		49.5
(-0.9) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 13.3
(-2.9)
A 		91.9
(-1.2)
A 		287.1
(3)
P 		104.6
(-0.9)
A 		27.8
(-2.6)
A 		8.9
(-3)
A 		278
B 24.1
(-2.8)
A 		129.4
(-0.9)
A 		352.8
(3)
P 		123
(-1)
A 		60.7
(-2.1)
A 		11.2
(-3)
A 		342
C 11.2
(-2.9)
A 		143.8
(0.5)
A 		240.1
(3)
A 		143.1
(0.5)
A 		8.7
(-3)
A 		7.3
(-3)
A 		233
avr 16.2
(-2.9) 		121.7
(-0.6) 		293.3
(3) 		123.6
(-0.6) 		32.4
(-2.5) 		9.1
(-3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.3
(-2.5)
A 		29
(2.6)
A 		30.7
(3)
A 		3.9
(-3)
A 		27
B 5
(-2.4)
A 		34.7
(3)
A 		25.2
(1.3)
A 		2
(-3)
A 		33
C 2.8
(-3)
A 		14.1
(-1.3)
A 		42.3
(3)
A 		18.9
(-0.6)
A 		40
avr 4.7
(-3) 		25.9
(1.5) 		32.7
(3) 		8.3
(-2.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 2.4
(-3)
A 		32.7
(0)
A 		62.5
(3)
P 		26.5
(-0.6)
A 		8.4
(-2.4)
A 		2.2
(-3)
A 		60
B 8.4
(-2.7)
A 		43.1
(-0.1)
A 		85.7
(3)
P 		32.6
(-0.9)
A 		24.6
(-1.5)
A 		4.2
(-3)
A 		82
C 4.2
(-2.8)
A 		43.9
(1.2)
A 		61.1
(3)
A 		28.8
(-0.3)
A 		2.8
(-3)
A 		2.4
(-3)
A 		59
avr 5
(-2.8) 		39.9
(0.3) 		69.8
(3) 		29.3
(-0.6) 		11.9
(-2.2) 		2.9
(-3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16615
Sequence Type Exemplar sequence
Representative Public ID C18A11.4 NCBI
Target Description C18A11.4 /REP_DB=WormBase Gene ID /WP=CE04035 /TR=Q18065 /GB=AAC69008.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076953 NCBI Caenorhabditis elegans C18A11.4 (C18A11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000023798 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8045492:8047356:1 11/11 None
C18A11.4 ENSEMBL cdna:known chromosome:CEL140:X:8045492:8047356:1 gene:C18A11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023788 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8045490-8047355(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A11.4
Entrez Gene 182761 Entrez gene
SwissProt Q18065 EMBL-EBI
WormBase CE04035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69008 Hypothetical protein C18A11.4 [Caenorhabditis elegans] ref|NP_509354.1| C18A11.4 [Caenorhabditis elegans] 1.0E-111
blast AAC69008 Hypothetical protein C18A11.4 [Caenorhabditis elegans] ref|NP_509354.1| C18A11.4 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023798 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:184565_AT
tttgatgaatgcgttcccgtaccaaagactaggaaacgagtcccgacgagcaagatcact
tcccgagcatccagatgagcggcactatgtgctttgtaaagttctgaaaaatggagggtt
tgtgccgctaccagcatcaagtgctgcgtattttaaattagctaaaaaggaggaactaag
aatagatgcatttgaaaatatgaaggatatccattttctccacgaaaaacaaacttggtt
ttttgacaagctggatgtcaatttcggcaaagaacttctctactggaatggtcctcacat
tggacagtttctaattatccgaaacaacttcagctatacgatttgttatgtttgccagat
ggaagacctcatggtaatcagggaaagaaaaataatatttgacattagtaagccggaaaa
tggatttcgcttttctcctattgagaaacctaaaagggacctttgtgagcttataatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGATGAATGCGTTCCCGTACCAA 576 665 33 Antisense
AACGAGTCCCGACGAGCAAGATCAC 411 141 67 Antisense
CACTTCCCGAGCATCCAGATGAGCG 289 197 89 Antisense
AAATGGAGGGTTTGTGCCGCTACCA 437 121 141 Antisense
GCCGCTACCAGCATCAAGTGCTGCG 374 285 156 Antisense
GAAGGATATCCATTTTCTCCACGAA 190 335 234 Antisense
CAAGCTGGATGTCAATTTCGGCAAA 163 187 279 Antisense
TTCGGCAAAGAACTTCTCTACTGGA 671 693 295 Antisense
TCTACTGGAATGGTCCTCACATTGG 180 613 311 Antisense
AATGGATTTCGCTTTTCTCCTATTG 156 163 451 Antisense
AGGGACCTTTGTGAGCTTATAATGT 316 1 487 Antisense
Sequence Source Affymetrix Proprietary Database