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[184564_at]

Description ZC404.11 /REP_DB=WormBase Gene ID /WP=CE07601 /TR=Q23293 /GB=AAA97969.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 35
(1.7)
A 		1.1
(-3)
A 		25.3
(0.4)
A 		44.3
(3)
A 		43
B 26.4
(0.6)
A 		7
(-3)
A 		38.9
(3)
A 		16.5
(-1.2)
A 		32
C 11.9
(-0.2)
A 		2.8
(-3)
A 		22.2
(3)
A 		4.8
(-2.4)
A 		19
avr 24.4
(2) 		3.6
(-3) 		28.8
(3) 		21.9
(1.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 63.1
(3)
A 		23.6
(-0.8)
A 		42.5
(1)
A 		15.9
(-1.6)
A 		1.2
(-3)
A 		24.7
(-0.7)
A 		62
B 17.4
(-1.1)
A 		4.9
(-3)
A 		29.4
(0.7)
A 		5.7
(-2.9)
A 		44.2
(3)
A 		15.7
(-1.4)
A 		39
C 31.9
(3)
A 		30.6
(2.7)
A 		26.4
(1.9)
A 		7.7
(-1.7)
A 		20.4
(0.8)
A 		0.8
(-3)
A 		31
avr 37.5
(3) 		19.7
(-0.9) 		32.8
(2) 		9.8
(-3) 		21.9
(-0.4) 		13.7
(-2.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.7
(3)
A 		0.2
(-3)
A 		6.6
(0.1)
A 		6.5
(0)
A 		13
B 8.4
(2.5)
A 		1.7
(-3)
A 		9
(3)
A 		3.5
(-1.5)
A 		7
C 3.9
(-0.3)
A 		0.8
(-3)
A 		7.7
(3)
A 		0.8
(-3)
A 		7
avr 8.3
(3) 		0.9
(-3) 		7.8
(2.6) 		3.6
(-0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.6
(3)
A 		8.4
(1.3)
A 		9.2
(1.7)
A 		4
(-1.1)
A 		0.4
(-3)
A 		6
(-0)
A 		11
B 6.1
(-1.3)
A 		1.6
(-3)
A 		7.2
(-0.9)
A 		1.5
(-3)
A 		18
(3)
A 		5.9
(-1.4)
A 		17
C 11.8
(3)
A 		9.4
(1.7)
A 		6.7
(0.3)
A 		1.6
(-2.3)
A 		6.6
(0.3)
A 		0.3
(-3)
A 		12
avr 9.8
(3) 		6.5
(0.3) 		7.7
(1.3) 		2.4
(-3) 		8.3
(1.8) 		4.1
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12266
Sequence Type Exemplar sequence
Representative Public ID ZC404.11 NCBI
Target Description ZC404.11 /REP_DB=WormBase Gene ID /WP=CE07601 /TR=Q23293 /GB=AAA97969.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072324 NCBI Caenorhabditis elegans ZC404.11 (ZC404.11) mRNA, complete cds. 11/11 None
GENEFINDER00000042528 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6805231:6806431:-1 9/11 None
ZC404.11 ENSEMBL cdna:known chromosome:CEL140:V:6805006:6806431:-1 gene:ZC404.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6805006-6806432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC404.11
Entrez Gene 191158 Entrez gene
SwissProt Q23293 EMBL-EBI
WormBase CE07601 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA97969 Hypothetical protein ZC404.11 [Caenorhabditis elegans] ref|NP_504725.1| ZC404.11 [Caenorhabditis elegans] 1.0E-152
blast AAA97969 Hypothetical protein ZC404.11 [Caenorhabditis elegans] ref|NP_504725.1| ZC404.11 [Caenorhabditis elegans] 1.0E-111
blast CAE71955 Hypothetical protein CBG19024 [Caenorhabditis briggsae] emb|CAE71954.1| Hypothetical protein CBG19023 [Caenorhabditis briggsae] 7.0E-99
blast AAL11103 Hypothetical protein ZC404.13 [Caenorhabditis elegans] ref|NP_504723.1| ZC404.13 [Caenorhabditis elegans] 1.0E-84
blast AAL11103 Hypothetical protein ZC404.13 [Caenorhabditis elegans] ref|NP_504723.1| ZC404.13 [Caenorhabditis elegans] 3.0E-82
blast AAA97968 Hypothetical protein ZC404.10 [Caenorhabditis elegans] ref|NP_504724.1| ZC404.10 [Caenorhabditis elegans] 2.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504725.1 6 41-63,76-98,115-137,177-199,234-256,266-288
ZC404.11 6 41-63,76-98,115-137,177-199,234-256,266-288
GENEFINDER00000042528 6 42-64,71-93,115-137,158-180,212-234,269-291
Sequence
Target Sequence 
>C. ELEGANS:184564_AT
ccgaatccctttatcttgctgttggaatggctttttgcagagttataactttaagttctg
caagtgacagtagagtatatgctgacggatctgtatttttggacatttctccattatcat
tagcaaacgattgtctgtttctgaagacatcaatattcttcagtggttcttgtttcaaaa
ttctaccaagcatccttatgtcaatgttctcaattattattttaatacgtattaaggctg
gaaaacaacgttctaattctttatcacataatcaaactgatcaagatgctcagattgacc
gatcaacgcgcttcattcaagtagtagtggttgtttttgttatcacggagacaccacagg
gatttttcagcgtattggggtcaatatcaatcaatgactatattaattattaccaacatc
tttcaatttttatgaacattctggcgttcttcaatactacaacaagtttcattatttaca
gtacactttcttcgaaatttcgaaaactattcgctcaactttttgtaccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAATCCCTTTATCTTGCTGTTGG 232 263 389 Antisense
TGCTGACGGATCTGTATTTTTGGAC 155 581 468 Antisense
GGACATTTCTCCATTATCATTAGCA 463 525 489 Antisense
TATTCTTCAGTGGTTCTTGTTTCAA 649 663 542 Antisense
AATTCTACCAAGCATCCTTATGTCA 432 177 567 Antisense
AACAACGTTCTAATTCTTTATCACA 376 135 632 Antisense
GATGCTCAGATTGACCGATCAACGC 567 413 673 Antisense
GATCAACGCGCTTCATTCAAGTAGT 160 421 689 Antisense
GACACCACAGGGATTTTTCAGCGTA 536 367 738 Antisense
ACATTCTGGCGTTCTTCAATACTAC 183 105 824 Antisense
TATTCGCTCAACTTTTTGTACCAGA 200 665 896 Antisense
Sequence Source Affymetrix Proprietary Database