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[184563_at]

Description C10H11.7 /REP_DB=WormBase Gene ID /WP=CE08096 /TR=P91035 /GB=AAB42346.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 36.2
(-3)
A 		64.8
(-0.2)
A 		59.1
(-0.7)
A 		96.9
(3)
A 		61
B 49.2
(3)
A 		7.4
(-3)
A 		35.7
(1.1)
A 		43
(2.1)
A 		42
C 36.9
(-1.9)
A 		22.1
(-3)
A 		31.9
(-2.3)
A 		103.5
(3)
A 		81
avr 40.8
(-1.9) 		31.4
(-3) 		42.2
(-1.7) 		81.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 2.5
(-3)
A 		3.2
(-3)
A 		36.2
(-1.8)
A 		5.4
(-2.9)
A 		99.3
(0.5)
A 		170
(3)
P 		168
B 25.4
(-1.9)
A 		44.3
(-0.9)
A 		36.5
(-1.3)
A 		6.4
(-3)
A 		99.4
(2.1)
A 		114.8
(3)
P 		108
C 37.5
(-1.2)
A 		56
(-0.2)
A 		6.5
(-3)
A 		5.8
(-3)
A 		102
(2.3)
A 		114
(3)
P 		108
avr 21.8
(-2.2) 		34.5
(-1.6) 		26.4
(-2) 		5.9
(-3) 		100.2
(1.5) 		132.9
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.2
(-3)
A 		14.1
(-0.5)
A 		15.4
(3)
A 		14.2
(-0.3)
A 		2
B 15.7
(3)
A 		1.8
(-3)
A 		8.3
(-0.2)
A 		9.2
(0.2)
A 		14
C 12.2
(0.2)
A 		6.3
(-3)
A 		11.1
(-0.4)
A 		17.4
(3)
A 		11
avr 13.7
(3) 		7.4
(-3) 		11.6
(1) 		13.6
(2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.1
(-2.9)
A 		7.9
(-1.9)
A 		1.4
(-2.9)
A 		30
(1.3)
A 		41.4
(3)
P 		41
B 8.8
(-2)
A 		14.7
(-1.1)
A 		8.9
(-1.9)
A 		1.7
(-3)
A 		40.4
(2.6)
A 		42.8
(3)
P 		41
C 13.9
(-0.9)
A 		17.1
(-0.4)
A 		1.7
(-2.9)
A 		1.2
(-3)
A 		33
(2.2)
A 		38.2
(3)
P 		37
avr 7.7
(-2) 		11
(-1.5) 		6.2
(-2.3) 		1.4
(-3) 		34.5
(2) 		40.8
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2357
Sequence Type Exemplar sequence
Representative Public ID C10H11.7 NCBI
Target Description C10H11.7 /REP_DB=WormBase Gene ID /WP=CE08096 /TR=P91035 /GB=AAB42346.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059033 NCBI Caenorhabditis elegans C10H11.7 (C10H11.7) mRNA, complete cds. 11/11 None
SNAP00000015950 ENSEMBL cdna:SNAP chromosome:CEL140:I:4719804:4720616:1 11/11 None
GENEFINDER00000015964 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4719804:4720616:1 11/11 None
C10H11.7 ENSEMBL cdna:known chromosome:CEL140:I:4719790:4721099:1 gene:C10H11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4719803-4720616(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10H11.7
Entrez Gene 3565564 Entrez gene
SwissProt P91035 EMBL-EBI
WormBase CE08096 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42346 Hypothetical protein C10H11.7 [Caenorhabditis elegans] ref|NP_491434.1| C10H11.7 [Caenorhabditis elegans] 8.0E-99
blast CAE65747 Hypothetical protein CBG10833 [Caenorhabditis briggsae] 2.0E-38
blast CAE63731 Hypothetical protein CBG08258 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.7E-29
Sequence
Target Sequence 
>C. ELEGANS:184563_AT
ggctgctttcaatgatacacttcgtgcagaaattgaagagaagaaagaagactcagtttc
cgaaaggacaactcgaaatggaaaaatactgaatgcaaaggatgaaccagagtttggaat
gaatattactccaaccacgttgttcttcaagtacccaattgggggaattggttattcatt
ctttacagtcaccaacacaacatcggagaaacaagcattcaaggtgaaatccagtgacaa
cacttggttccgttcaaaacccagcgtcggtttcattaagagtggtgaaaaagttcatgt
gagagtcacattcaatagtccagacgcaggaaaagaaagacccgaaagaggctcagacaa
caaaaatcatgttgcaatcttccacgtggcagctggtgacgcgaagacgtacaaagaagc
gtttgcgaagaaagcggcggacggagttcatcatttctttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCTTTCAATGATACACTTCGT 498 539 15 Antisense
ATGAATATTACTCCAACCACGTTGT 162 39 133 Antisense
CCACGTTGTTCTTCAAGTACCCAAT 312 275 149 Antisense
GTTATTCATTCTTTACAGTCACCAA 29 449 185 Antisense
ACAGTCACCAACACAACATCGGAGA 223 107 199 Antisense
GTGACAACACTTGGTTCCGTTCAAA 529 479 248 Antisense
CCCAGCGTCGGTTTCATTAAGAGTG 277 259 274 Antisense
GAGTCACATTCAATAGTCCAGACGC 532 399 317 Antisense
ATCATGTTGCAATCTTCCACGTGGC 422 29 380 Antisense
ACGTGGCAGCTGGTGACGCGAAGAC 461 95 398 Antisense
GGACGGAGTTCATCATTTCTTTGCA 37 525 453 Antisense
Sequence Source Affymetrix Proprietary Database