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[184562_at]

Description C18A11.2 /REP_DB=WormBase Gene ID /WP=CE04033 /TR=Q18069 /GB=AAC69006.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 32      6grp_total > 13      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5058
1 2 3 4 range
A 1089.4
(-2.3)
P 		630.7
(-2.9)
P 		527.9
(-3)
P 		5501.1
(3)
P 		4973
B 1367.1
(-1.5)
P 		500.6
(-3)
P 		784.6
(-2.5)
P 		4023
(3)
P 		3522
C 1096.4
(-2.2)
P 		442.7
(-3)
P 		659.7
(-2.7)
P 		5431
(3)
P 		4988
avr 1184.3
(-2.1) 		524.7
(-3) 		657.4
(-2.8) 		4985
(3) 		4460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1111
1 2 3 4 5 6 range
A 1771.8
(3)
P 		1321
(0.5)
P 		1673.3
(2.5)
P 		1285.7
(0.3)
P 		1038.3
(-1)
P 		676.9
(-3)
P 		1095
B 1490.9
(0.9)
P 		1787.8
(3)
P 		1406.4
(0.3)
P 		1223.6
(-0.9)
P 		1316.7
(-0.3)
P 		929.8
(-3)
P 		858
C 1409.6
(0.8)
P 		1666.8
(3)
P 		1168.4
(-1.3)
P 		1614.3
(2.5)
P 		976.6
(-3)
P 		1202.8
(-1)
P 		690
avr 1557.4
(2.7) 		1591.9
(3) 		1416
(1.4) 		1374.5
(1) 		1110.5
(-1.4) 		936.5
(-3) 		655
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 792
1 2 3 4 range
A 396.6
(-0.7)
P 		136.9
(-3)
P 		138
(-3)
P 		805.3
(3)
P 		668
B 436
(-0.4)
P 		123.6
(-3)
P 		181.8
(-2.5)
P 		857.3
(3)
P 		734
C 362.9
(-1.2)
P 		127.3
(-3)
P 		229.9
(-2.2)
P 		915.8
(3)
P 		789
avr 398.5
(-0.8) 		129.3
(-3) 		183.2
(-2.6) 		859.5
(3) 		730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 326.6
(0.2)
P 		469.8
(3)
P 		364.4
(0.9)
P 		326.1
(0.2)
P 		313.3
(-0.1)
P 		164.8
(-3)
P 		305
B 518.7
(1.3)
P 		595.1
(3)
P 		341.5
(-2.6)
P 		324.1
(-3)
P 		535
(1.7)
P 		346.7
(-2.5)
P 		271
C 522.5
(3)
P 		508.6
(2.6)
P 		297.4
(-3)
P 		324.6
(-2.3)
P 		316
(-2.5)
P 		402.7
(-0.2)
P 		225
avr 455.9
(1.1) 		524.5
(3) 		334.4
(-2.2) 		324.9
(-2.4) 		388.1
(-0.7) 		304.7
(-3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16995
Sequence Type Exemplar sequence
Representative Public ID C18A11.2 NCBI
Target Description C18A11.2 /REP_DB=WormBase Gene ID /WP=CE04033 /TR=Q18069 /GB=AAC69006.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076956 NCBI Caenorhabditis elegans C18A11.2 (C18A11.2) mRNA, complete cds. 11/11 None
SNAP00000023791 ENSEMBL cdna:SNAP chromosome:CEL140:X:8067405:8067962:1 11/11 None
GENEFINDER00000023797 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8067627:8067962:1 11/11 None
C18A11.2 ENSEMBL cdna:known chromosome:CEL140:X:8067627:8067962:1 gene:C18A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8067625-8067961(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A11.2
Entrez Gene 182760 Entrez gene
SwissProt Q18069 EMBL-EBI
WormBase CE04033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69006 Hypothetical protein C18A11.2 [Caenorhabditis elegans] ref|NP_509357.1| C18A11.2 [Caenorhabditis elegans] 4.0E-23
blast AAC69006 Hypothetical protein C18A11.2 [Caenorhabditis elegans] ref|NP_509357.1| C18A11.2 [Caenorhabditis elegans] 5.0E-23
blast CAE70345 Hypothetical protein CBG16892 [Caenorhabditis briggsae] 8.0E-22
blast CAE70345 Hypothetical protein CBG16892 [Caenorhabditis briggsae] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000023791 2 13-35,63-82
Sequence
Target Sequence 
>C. ELEGANS:184562_AT
tgttcaacgtcaaacttcttctcgcttttttcttgtgtgttttggtagttgaaactacca
caaaggtggtcaagtttcactcagtttccttcaatcaaccatcctggagaacttcccaac
gctccagacagattcaaggctacggtccagtgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCAACGTCAAACTTCTTCTCGC 207 561 14 Antisense
TCTCGCTTTTTTCTTGTGTGTTTTG 580 611 33 Antisense
GCTTTTTTCTTGTGTGTTTTGGTAG 369 303 37 Antisense
GGTGGTCAAGTTTCACTCAGTTTCC 224 499 78 Antisense
CAAGTTTCACTCAGTTTCCTTCAAT 522 183 84 Antisense
TCACTCAGTTTCCTTCAATCAACCA 118 627 90 Antisense
TTTCCTTCAATCAACCATCCTGGAG 369 669 98 Antisense
AACCATCCTGGAGAACTTCCCAACG 334 147 110 Antisense
CCTGGAGAACTTCCCAACGCTCCAG 59 265 116 Antisense
CCAACGCTCCAGACAGATTCAAGGC 243 277 129 Antisense
GATTCAAGGCTACGGTCCAGTGTCG 153 429 144 Antisense
Sequence Source Affymetrix Proprietary Database