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[184561_at]

Description F07G11.4 /REP_DB=WormBase Gene ID /WP=CE09225 /TR=O16230 /GB=AAG24051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 32      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.1
(-3)
A 		6.4
(-2.8)
A 		8.2
(-2.5)
A 		39.8
(3)
A 		35
B 8.1
(-2.6)
A 		10.3
(-2.2)
A 		38.7
(3)
A 		6.1
(-3)
A 		33
C 28.6
(3)
A 		22.5
(0.1)
A 		21.1
(-0.6)
A 		16.1
(-3)
A 		13
avr 13.9
(-2.5) 		13.1
(-3) 		22.7
(3) 		20.7
(1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1254
1 2 3 4 5 6 range
A 23.2
(-3)
A 		58.6
(-2.8)
A 		366.9
(-1.3)
P 		1263.3
(3)
P 		905.2
(1.3)
P 		81.4
(-2.7)
P 		1240
B 24.1
(-3)
A 		54.3
(-2.8)
A 		369.1
(-1.3)
P 		1217.9
(3)
P 		1066.2
(2.2)
P 		115.4
(-2.5)
P 		1194
C 9.7
(-3)
A 		57.1
(-2.8)
A 		342
(-1.3)
P 		1149.6
(3)
P 		695.1
(0.6)
P 		133.5
(-2.3)
P 		1140
avr 19
(-3) 		56.7
(-2.8) 		359.3
(-1.3) 		1210.3
(3) 		888.8
(1.4) 		110.1
(-2.5) 		1191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-2.3)
A 		1.4
(-3)
A 		2.1
(-2)
A 		5.8
(3)
A 		4
B 2.6
(-2)
A 		2.5
(-2.1)
A 		9
(3)
A 		1.3
(-3)
A 		8
C 9.5
(3)
A 		6.5
(0.4)
A 		7.4
(1.1)
A 		2.7
(-3)
A 		7
avr 4.7
(-0.1) 		3.5
(-2.6) 		6.2
(3) 		3.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 4.3
(-3)
A 		20.8
(-2.7)
A 		79.9
(-1.6)
P 		320.4
(3)
P 		273.2
(2.1)
P 		19.8
(-2.7)
P 		316
B 8.4
(-3)
A 		18.1
(-2.9)
A 		89.6
(-1.9)
P 		322.6
(1.4)
P 		433.2
(3)
P 		43
(-2.5)
P 		425
C 3.6
(-3)
A 		17.4
(-2.6)
A 		87
(-0.8)
P 		231.2
(3)
P 		224.9
(2.8)
P 		44.7
(-1.9)
P 		228
avr 5.4
(-3) 		18.8
(-2.7) 		85.5
(-1.4) 		291.4
(2.6) 		310.4
(3) 		35.8
(-2.4) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12159
Sequence Type Exemplar sequence
Representative Public ID F07G11.4 NCBI
Target Description F07G11.4 /REP_DB=WormBase Gene ID /WP=CE09225 /TR=O16230 /GB=AAG24051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072454 NCBI Caenorhabditis elegans F07G11.4 (F07G11.4) mRNA, complete cds. 11/11 None
SNAP00000010035 ENSEMBL cdna:SNAP chromosome:CEL140:V:7295347:7297392:-1 10/11 None
GENEFINDER00000010043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7295347:7300287:-1 11/11 None
F07G11.4 ENSEMBL cdna:known chromosome:CEL140:V:7295347:7297392:-1 gene:F07G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7295347-7297393(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G11.4
Entrez Gene 184159 Entrez gene
SwissProt O16230 EMBL-EBI
WormBase CE09225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504855 F07G11.4 [Caenorhabditis elegans] gb|AAG24051.1| Hypothetical protein F07G11.4 [Caenorhabditis elegans] 0.0
blast NP_504857 F07G11.3 [Caenorhabditis elegans] gb|AAG24048.1| Hypothetical protein F07G11.3 [Caenorhabditis elegans] 0.0
blast AAB69873 Hypothetical protein C13A2.1 [Caenorhabditis elegans] ref|NP_504854.2| C13A2.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.9E-102
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.3E-61
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010043 8 10-29,42-64,90-112,125-147,167-186,211-233,248-270,439-458
Sequence
Target Sequence 
>C. ELEGANS:184561_AT
gtttggcagtatgacttacaagcattttagggaaaccggtaaaagtgtggttgatccatt
gcgtgtcaatttcacatctctgcattttccaccacaaactcccaaaacagagaaatacat
tgtgtctgagaatgtgatcactcatcttaaaacaatcgactgggttgacaaaactgagga
tcccgacgagaaagaactcattgagcccttttattatgacaattcttcagcaattatccc
taaaaaagacattatggatcttgaagatgatcttcgcaaaatgatgacaaggctgcaaaa
aactagaatgttctcaaaacttccccgaattcgctactactcggatcttgtgctcaaatg
ttataacgaaaaatattacgatttgtactatagcaatcgtaaatcagagattacgtgccc
tggtccacagttttgcgatttcacacaacaagtaaacatcaaatgtgtgcgagtcaatgc
cacatacagttcgatgaaaaaattgatgcctgtcacgtattatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGCAGTATGACTTACAAGCAT 509 451 939 Antisense
GACAAAACTGAGGATCCCGACGAGA 333 363 1105 Antisense
GAACTCATTGAGCCCTTTTATTATG 249 349 1132 Antisense
GACAATTCTTCAGCAATTATCCCTA 168 365 1156 Antisense
TCAAAACTTCCCCGAATTCGCTACT 491 627 1252 Antisense
GAATTCGCTACTACTCGGATCTTGT 16 325 1265 Antisense
TACTACTCGGATCTTGTGCTCAAAT 654 643 1273 Antisense
AATCAGAGATTACGTGCCCTGGTCC 145 151 1340 Antisense
GGTCCACAGTTTTGCGATTTCACAC 128 503 1360 Antisense
GTGTGCGAGTCAATGCCACATACAG 259 487 1403 Antisense
AATTGATGCCTGTCACGTATTATTA 249 179 1439 Antisense
Sequence Source Affymetrix Proprietary Database