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[184559_at]

Description T08E11.8 /REP_DB=WormBase Gene ID /WP=CE19575 /TR=O76643 /GB=AAC26319.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 52.5
(3)
A 		7.8
(-3)
A 		52
(2.9)
A 		11.4
(-2.5)
A 		45
B 9.1
(-3)
A 		18.9
(-1.4)
A 		43.3
(2.7)
A 		44.8
(3)
A 		36
C 45.9
(0.9)
A 		27.8
(-0.7)
A 		2.4
(-3)
A 		69
(3)
A 		67
avr 35.8
(1.5) 		18.2
(-3) 		32.6
(0.7) 		41.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 72.2
(3)
A 		28.7
(-2.5)
A 		59.6
(1.4)
A 		64.9
(2.1)
P 		24.6
(-3)
A 		41.9
(-0.8)
A 		48
B 37.3
(0.1)
A 		56.9
(3)
P 		36.2
(-0.1)
A 		38.5
(0.3)
A 		39.5
(0.4)
P 		16.6
(-3)
A 		40
C 38.9
(-2.2)
A 		81.6
(3)
A 		39.4
(-2.1)
A 		32.3
(-3)
A 		35.5
(-2.6)
A 		37.2
(-2.4)
A 		49
avr 49.5
(1.4) 		55.7
(3) 		45.1
(0.3) 		45.2
(0.4) 		33.2
(-2.7) 		31.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.1
(3)
A 		1.7
(-3)
A 		13.6
(1.1)
A 		1.7
(-3)
A 		17
B 2.9
(-3)
A 		4.7
(-1.5)
A 		10
(3)
A 		9.6
(2.7)
A 		7
C 15.2
(3)
A 		8
(0)
A 		0.8
(-3)
A 		11.6
(1.5)
A 		14
avr 12.4
(3) 		4.8
(-3) 		8.1
(-0.4) 		7.6
(-0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13.3
(0.9)
A 		10.2
(-1.2)
A 		13
(0.7)
A 		16.5
(3)
P 		7.4
(-3)
A 		10.2
(-1.2)
A 		9
B 13
(0.2)
A 		18.9
(3)
P 		8.8
(-1.8)
A 		10.2
(-1.1)
A 		16
(1.6)
P 		6.2
(-3)
A 		13
C 14.4
(-0.4)
A 		24.9
(3)
A 		10
(-1.9)
A 		6.5
(-3)
A 		11.5
(-1.4)
A 		12.5
(-1)
A 		18
avr 13.6
(-0.1) 		18
(3) 		10.6
(-2.3) 		11.1
(-1.9) 		11.6
(-1.6) 		9.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5723
Sequence Type Exemplar sequence
Representative Public ID T08E11.8 NCBI
Target Description T08E11.8 /REP_DB=WormBase Gene ID /WP=CE19575 /TR=O76643 /GB=AAC26319.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061688 NCBI Caenorhabditis elegans T08E11.8 (T08E11.8) mRNA, complete cds. 11/11 None
SNAP00000018374 ENSEMBL cdna:SNAP chromosome:CEL140:II:1833630:1835786:-1 11/11 None
T08E11.8 ENSEMBL cdna:known chromosome:CEL140:II:1833630:1835786:-1 gene:T08E11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1833628-1835785(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.8
Entrez Gene 188290 Entrez gene
SwissProt O76643 EMBL-EBI
WormBase CE19575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26319 Hypothetical protein T08E11.8 [Caenorhabditis elegans] ref|NP_494089.1| T08E11.8 [Caenorhabditis elegans] 0.0
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 9.0E-87
blast AAY43980 Hypothetical protein ZK250.5b [Caenorhabditis elegans] ref|NP_001022519.1| ZK250.5b [Caenorhabditis elegans] 9.0E-87
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 1.0E-86
blast AAY43980 Hypothetical protein ZK250.5b [Caenorhabditis elegans] ref|NP_001022519.1| ZK250.5b [Caenorhabditis elegans] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.0E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-26
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-30
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-26
Sequence
Target Sequence 
>C. ELEGANS:184559_AT
cgtggcgctttgattccagtagagaaactgaatataacaacgtctagtttgaaaagagcg
gagcaagtactacaaaatttgaatcccgttgcaattaaaacaattgaaattcaaccgact
ccctgggtgacatcccgaaccataggacatattgaagggcaaatatgcttacagcaatgg
ataaatgcagatgagttgaagatacaaagtttcgaagtggaatgtgatcttgagaagttg
gttcatttttcaaaagttgacatatttttatattcaattacattggaagatgtcttatat
ttgaaagagaaattcttattgtctaccaatttccgtcaattcaaagccaagctctacaag
acagatgtcgatgacataatattcgaagagaacttcttgggagttccgtttcgcagagtt
gacggtatatcatccgatcaacctgaaatttggttttttccctacacatatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGCGCTTTGATTCCAGTAGAGA 448 243 1072 Antisense
ACAAAATTTGAATCCCGTTGCAATT 24 111 1143 Antisense
AATTGAAATTCAACCGACTCCCTGG 647 161 1173 Antisense
GGTGACATCCCGAACCATAGGACAT 288 501 1197 Antisense
GAAGGGCAAATATGCTTACAGCAAT 216 335 1225 Antisense
TTGTCTACCAATTTCCGTCAATTCA 22 709 1390 Antisense
AGCCAAGCTCTACAAGACAGATGTC 456 83 1416 Antisense
CTTCTTGGGAGTTCCGTTTCGCAGA 137 221 1464 Antisense
GGAGTTCCGTTTCGCAGAGTTGACG 605 517 1471 Antisense
GACGGTATATCATCCGATCAACCTG 180 377 1492 Antisense
TTTGGTTTTTTCCCTACACATATAG 313 667 1520 Antisense
Sequence Source Affymetrix Proprietary Database