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[184557_at]

Description Y53F4B.36 /REP_DB=WormBase Gene ID /WP=CE26160 /TR=Q9NA95 /GB=CAB61110.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 15.1
(-3)
A 		15.7
(-2.9)
A 		76.3
(3)
A 		66.4
(2)
A 		61
B 44.5
(0.3)
A 		63.5
(3)
A 		51.8
(1.3)
A 		21.5
(-3)
A 		42
C 32.8
(-3)
A 		35.5
(-2.2)
A 		42.4
(-0.2)
A 		53.1
(3)
A 		20
avr 30.8
(-3) 		38.2
(-1.3) 		56.8
(3) 		47
(0.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 59.2
(3)
A 		7.1
(-3)
A 		32.9
(-0)
A 		53.6
(2.4)
A 		47.4
(1.6)
A 		44.5
(1.3)
A 		52
B 44.9
(0.3)
A 		27.6
(-1.1)
A 		16.1
(-2)
A 		2.7
(-3)
A 		58.6
(1.3)
A 		80.5
(3)
A 		78
C 63.3
(-0.5)
A 		62.7
(-0.6)
A 		81.8
(3)
A 		64.2
(-0.4)
A 		50.4
(-3)
A 		78.4
(2.4)
P 		31
avr 55.8
(1) 		32.5
(-3) 		43.6
(-1.1) 		40.2
(-1.7) 		52.1
(0.3) 		67.8
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.5
(-2.2)
A 		3.4
(-3)
A 		20
(3)
A 		9.7
(-0.7)
A 		17
B 14.2
(2.2)
A 		15.7
(3)
A 		12
(1)
A 		4.6
(-3)
A 		11
C 10.9
(-1)
A 		10.2
(-1.7)
A 		14.8
(3)
A 		8.9
(-3)
A 		6
avr 10.2
(-1.1) 		9.8
(-1.4) 		15.6
(3) 		7.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.9
(1.3)
A 		2.5
(-3)
A 		7.2
(-0.6)
A 		13.6
(2.6)
A 		14.3
(3)
A 		10.8
(1.2)
A 		12
B 15.6
(0.1)
A 		9.2
(-1.3)
A 		3.9
(-2.3)
A 		0.7
(-3)
A 		23.8
(1.7)
A 		30
(3)
A 		29
C 23.4
(1.7)
A 		19.1
(-0.2)
A 		20.8
(0.5)
A 		12.9
(-3)
A 		16.3
(-1.5)
A 		26.3
(3)
P 		13
avr 16.6
(0.4) 		10.3
(-2.5) 		10.6
(-2.3) 		9.1
(-3) 		18.1
(1.1) 		22.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3516
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.36 NCBI
Target Description Y53F4B.36 /REP_DB=WormBase Gene ID /WP=CE26160 /TR=Q9NA95 /GB=CAB61110.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064721(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064721 NCBI Caenorhabditis elegans Y53F4B.36 (Y53F4B.36) mRNA, complete cds. 10/11 None
SNAP00000043073 ENSEMBL cdna:SNAP chromosome:CEL140:II:15173239:15177019:1 10/11 None
GENEFINDER00000043118 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15176030:15177181:1 11/11 None
Y53F4B.36 ENSEMBL cdna:known chromosome:CEL140:II:15175877:15177161:1 gene:Y53F4B.36 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15175873-15177178(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.36
Entrez Gene 190229 Entrez gene
SwissProt Q9NA95 EMBL-EBI
WormBase CE35677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61110 Hypothetical protein Y53F4B.36 [Caenorhabditis elegans] ref|NP_497122.2| Y53F4B.36 [Caenorhabditis elegans] 1.0E-169
blast CAB61110 Hypothetical protein Y53F4B.36 [Caenorhabditis elegans] ref|NP_497122.2| Y53F4B.36 [Caenorhabditis elegans] 1.0E-130
blast CAB61110 Hypothetical protein Y53F4B.36 [Caenorhabditis elegans] ref|NP_497122.2| Y53F4B.36 [Caenorhabditis elegans] 1.0E-124
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-110
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-110
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 4.0E-89
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:184557_AT
ttgaaacctcaagatcttccactcggagtcctcggcgttcttatcaacggaatagttgat
gggaatgaaactcacgaaaaggctatggcagttcaaccacgaggattctttgattttatg
aaaaagaaagagaagcagtctgaagaccgccggaagggatttttcactgtgccagacgcg
attcaagttcagcggctcaagatgcacgagattgactaccgttcctattcgggagacttt
atcagcaatctcgtcacagttatgtctatggctgtaactagtccatatctctctaaactc
gacaggttgcccattgtggtgagtgcctgtaaaagagcaatgtgttttatctacgatcgt
ccgacaaactcgataattcttcttgatactcatatgcatttcaaacgaagagctgttagt
gttctctgtgttgcatcatttgaagaaataactgattttattgtttcggtaactgagatc
gttttcccaaaaatattcgaatctgcggatgctgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAACCTCAAGATCTTCCACTCG 164 683 295 Antisense
GTCCTCGGCGTTCTTATCAACGGAA 242 471 322 Antisense
GGCAGTTCAACCACGAGGATTCTTT 693 533 381 Antisense
GATTTTTCACTGTGCCAGACGCGAT 507 429 452 Antisense
GATTGACTACCGTTCCTATTCGGGA 236 433 504 Antisense
CAGCAATCTCGTCACAGTTATGTCT 143 205 537 Antisense
GCTGTAACTAGTCCATATCTCTCTA 667 295 565 Antisense
CTCTCTAAACTCGACAGGTTGCCCA 275 229 583 Antisense
AGGTTGCCCATTGTGGTGAGTGCCT 327 57 598 Antisense
ATCTACGATCGTCCGACAAACTCGA 128 31 643 Antisense
ATTCGAATCTGCGGATGCTGCTGAA 263 7 789 Antisense
Sequence Source Affymetrix Proprietary Database