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[184556_at]

Description C18B10.2 /REP_DB=WormBase Gene ID /WP=CE08296 /TR=P91076 /GB=AAK18886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 02      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 16.6
(-3)
A 		30.2
(-1.5)
A 		41.1
(-0.4)
A 		72.3
(3)
A 		56
B 38.2
(1)
A 		19.1
(-2.4)
A 		15.6
(-3)
A 		49.4
(3)
P 		34
C 37.8
(-2.4)
A 		25.2
(-3)
A 		29.5
(-2.8)
A 		149.3
(3)
P 		124
avr 30.9
(-2.4) 		24.8
(-3) 		28.7
(-2.6) 		90.3
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.3
(-3)
A 		4.1
(-2.7)
A 		36.7
(2.1)
A 		26.5
(0.6)
A 		42.8
(3)
A 		30.1
(1.1)
A 		41
B 15.9
(1.1)
A 		21
(3)
A 		6.2
(-2.5)
A 		4.9
(-3)
A 		7.8
(-1.9)
A 		16.3
(1.2)
A 		16
C 4.9
(-2.9)
A 		42.6
(3)
A 		24.7
(0.2)
A 		27.7
(0.7)
A 		4.1
(-3)
A 		15.3
(-1.3)
A 		39
avr 7.7
(-3) 		22.6
(3) 		22.5
(3) 		19.7
(1.8) 		18.2
(1.2) 		20.6
(2.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6
(-3)
A 		6.5
(-2.4)
A 		10.8
(3)
A 		10.6
(2.8)
A 		5
B 12.2
(3)
A 		4.7
(-2.2)
A 		3.6
(-3)
A 		10.5
(1.8)
P 		9
C 12.5
(-1.2)
A 		7.2
(-3)
A 		10.3
(-2)
A 		25.2
(3)
P 		18
avr 10.2
(-0.4) 		6.1
(-3) 		8.2
(-1.6) 		15.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.5
(-2.5)
A 		8
(0.6)
A 		6.7
(0)
A 		12.9
(3)
A 		7.3
(0.3)
A 		13
B 5.5
(1.4)
A 		7
(3)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		3.2
(-1)
A 		6.1
(2.1)
A 		6
C 1.8
(-2.7)
A 		13
(3)
A 		6.3
(-0.4)
A 		5.6
(-0.8)
A 		1.3
(-3)
A 		5.1
(-1.1)
A 		12
avr 2.6
(-3) 		7.2
(3) 		5.3
(0.5) 		4.5
(-0.5) 		5.8
(1.2) 		6.2
(1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11400
Sequence Type Exemplar sequence
Representative Public ID C18B10.2 NCBI
Target Description C18B10.2 /REP_DB=WormBase Gene ID /WP=CE08296 /TR=P91076 /GB=AAK18886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072527 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-10) (srbc-10) mRNA, complete cds. 11/11 None
GENEFINDER00000031946 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7494413:7495616:-1 11/11 None
C18B10.2 ENSEMBL cdna:known chromosome:CEL140:V:7494467:7495616:-1 gene:C18B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7494467-7495617(-) 99.11 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-10
Ensembl C18B10.2
Entrez Gene 182769 Entrez gene
SwissProt P91076 EMBL-EBI
WormBase CE08296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18886 Serpentine receptor, class bc (class b-like) protein 10 [Caenorhabditis elegans] ref|NP_504928.1| Serpentine Receptor, class BC (class B-like) family member (srbc-10) [Caenorhabditis elegans] 1.0E-163
blast AAK18891 Serpentine receptor, class bc (class b-like) protein 11 [Caenorhabditis elegans] ref|NP_504929.1| Serpentine Receptor, class BC (class B-like) family member (srbc-11) [Caenorhabditis elegans] 1.0E-111
blast AAW88410 Serpentine receptor, class bc (class b-like) protein 8 [Caenorhabditis elegans] ref|NP_504925.2| Serpentine Receptor, class BC (class B-like) family member (srbc-8) [Caenorhabditis elegans] 7.0E-90
blast AAW88410 Serpentine receptor, class bc (class b-like) protein 8 [Caenorhabditis elegans] ref|NP_504925.2| Serpentine Receptor, class BC (class B-like) family member (srbc-8) [Caenorhabditis elegans] 8.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.6E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504928.1 7 20-42,55-77,92-114,135-157,190-209,222-241,261-283
C18B10.2 7 20-42,55-77,92-114,135-157,190-209,222-241,261-283
GENEFINDER00000031946 7 20-42,55-77,92-114,135-157,190-209,222-241,261-283
Sequence
Target Sequence 
>C. ELEGANS:184556_AT
atctcggatttccacttcaatcggtggcagctatcaggacgatcatagctgtcgcaattt
caatagaacgggttttggctctttgcactcctgtactttttcataattatcgtcatcgat
ttcctagtattataattctaatactagcagtatgctcgggaatttttgaagatttagtcc
ttttccaatcgtgtactttaaatctttctaacattccaagaaactgcggtgtattaagat
gcgccgttgacaagtgtttttttgatcattgggctgacagatctataatgtatgcattga
actttttgtgctccggacttctttctataaaattgattttctttaacaaatctctaaatg
ggcaaggtgaacattcaaaagcaagtgttaaccatatagcactgctagatgcagccaatg
tatttttatgtgattttcttccaaattcaatttcaaactatgcggcacaattcgaatttt
ctagctttcagaacattggcccttatatttatatcataaagctctttggaatagcaattg
agacgtgcttcatctgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCGGATTTCCACTTCAATCGGT 200 33 296 Antisense
CGGTGGCAGCTATCAGGACGATCAT 616 243 317 Antisense
GGACGATCATAGCTGTCGCAATTTC 131 523 332 Antisense
TAGAACGGGTTTTGGCTCTTTGCAC 470 651 359 Antisense
ATCGTCATCGATTTCCTAGTATTAT 631 35 404 Antisense
GATTTAGTCCTTTTCCAATCGTGTA 159 315 466 Antisense
GATGCGCCGTTGACAAGTGTTTTTT 102 415 533 Antisense
TGCTCCGGACTTCTTTCTATAAAAT 31 581 604 Antisense
GCGGCACAATTCGAATTTTCTAGCT 461 293 757 Antisense
GAACATTGGCCCTTATATTTATATC 656 349 786 Antisense
AATTGAGACGTGCTTCATCTGCTGG 24 179 831 Antisense
Sequence Source Affymetrix Proprietary Database