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[184554_at]

Description C39D10.1 /REP_DB=WormBase Gene ID /WP=CE04180 /TR=Q18528 /GB=AAK39205.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 126.4
(2.9)
A 		128.1
(3)
A 		79.5
(-1)
A 		55.3
(-3)
A 		73
B 98.8
(-2.2)
A 		133.3
(3)
A 		123.9
(1.6)
A 		93.4
(-3)
A 		40
C 98.9
(-0.4)
A 		74.5
(-2)
A 		59.1
(-3)
A 		149.6
(3)
M 		91
avr 108
(2) 		112
(3) 		87.5
(-3) 		99.4
(-0.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 65.8
(-1.5)
A 		74.5
(1.2)
A 		80.4
(3)
A 		74.5
(1.2)
A 		65.9
(-1.5)
A 		61
(-3)
A 		19
B 83.7
(-0.7)
A 		70.9
(-2.4)
A 		111
(3)
A 		73.3
(-2.1)
A 		66.8
(-3)
A 		84.1
(-0.7)
A 		44
C 102.2
(3)
A 		76.7
(1.2)
A 		74.7
(1.1)
A 		17.1
(-3)
A 		70.7
(0.8)
A 		74
(1)
A 		85
avr 83.9
(2.1) 		74
(0.4) 		88.7
(3) 		55
(-3) 		67.8
(-0.7) 		73
(0.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 46
(3)
A 		27.8
(0.1)
A 		20.8
(-1)
A 		8.1
(-3)
A 		38
B 31.5
(2.4)
A 		32.9
(3)
A 		28.7
(1.1)
A 		19.9
(-3)
A 		13
C 32.7
(3)
A 		21.4
(-2.6)
A 		20.6
(-3)
A 		25.2
(-0.7)
M 		12
avr 36.7
(3) 		27.4
(0.1) 		23.4
(-1.2) 		17.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 12.1
(-3)
A 		26.5
(3)
A 		17.5
(-0.8)
A 		18.9
(-0.2)
A 		19.9
(0.2)
A 		14.9
(-1.8)
A 		14
B 29.1
(1.9)
A 		23.6
(-0.9)
A 		26.9
(0.8)
A 		19.4
(-3)
A 		27.1
(0.9)
A 		31.4
(3)
A 		12
C 37.9
(3)
A 		23.4
(0.5)
A 		19
(-0.3)
A 		3.4
(-3)
A 		22.9
(0.4)
A 		24.8
(0.7)
A 		35
avr 26.4
(3) 		24.5
(2.1) 		21.1
(0.5) 		13.9
(-3) 		23.3
(1.5) 		23.7
(1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16310
Sequence Type Exemplar sequence
Representative Public ID C39D10.1 NCBI
Target Description C39D10.1 /REP_DB=WormBase Gene ID /WP=CE04180 /TR=Q18528 /GB=AAK39205.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076932 NCBI Caenorhabditis elegans C39D10.1 (C39D10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015641 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7901975:7907061:1 11/11 None
C39D10.1 ENSEMBL cdna:known chromosome:CEL140:X:7906906:7907061:1 gene:C39D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7906904-7907060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39D10.1
Entrez Gene 183335 Entrez gene
SwissProt Q18528 EMBL-EBI
WormBase CE04180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28360 Hypothetical protein C39D10.11 [Caenorhabditis elegans] ref|NP_001024449.1| C39D10.11 [Caenorhabditis elegans] 0.0
blast CAE70318 Hypothetical protein CBG16845 [Caenorhabditis briggsae] 1.0E-177
blast AAK39205 Hypothetical protein C39D10.1 [Caenorhabditis elegans] ref|NP_509333.1| C39D10.1 [Caenorhabditis elegans] 2.0E-13
blast AAK39205 Hypothetical protein C39D10.1 [Caenorhabditis elegans] ref|NP_509333.1| C39D10.1 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184554_AT
atgactactggaaaagatgatgttgataccaccaccactcaaaacatgatcttcacttcg
ccagtcaatgtcgatctcgaatcctgctcggctgatcgagtcacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTACTGGAAAAGATGATGTTG 681 41 13 Antisense
AGATGATGTTGATACCACCACCACT 693 67 27 Antisense
ATACCACCACCACTCAAAACATGAT 415 23 38 Antisense
CAAAACATGATCTTCACTTCGCCAG 408 191 52 Antisense
TCTTCACTTCGCCAGTCAATGTCGA 471 615 62 Antisense
ACTTCGCCAGTCAATGTCGATCTCG 396 101 67 Antisense
CGCCAGTCAATGTCGATCTCGAATC 447 257 71 Antisense
CAATGTCGATCTCGAATCCTGCTCG 482 183 78 Antisense
CTCGAATCCTGCTCGGCTGATCGAG 510 233 88 Antisense
GAATCCTGCTCGGCTGATCGAGTCA 552 329 91 Antisense
CCTGCTCGGCTGATCGAGTCACGGC 176 267 95 Antisense
Sequence Source Affymetrix Proprietary Database