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[184553_s_at]

Description Y52B11A.9 /REP_DB=WormBase Gene ID /WP=CE20297 /TR=Q9XWF2 /GB=CAA21720.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_high_8_8 > 32      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 54      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 307.6
(3)
P 		223.3
(0.4)
P 		244.7
(1.1)
A 		113.1
(-3)
A 		195
B 409.4
(3)
P 		272.6
(-1.4)
A 		226.5
(-2.9)
P 		222.7
(-3)
P 		187
C 369.9
(3)
P 		229.3
(-2)
M 		254.5
(-1.1)
P 		202.3
(-3)
M 		168
avr 362.3
(3) 		241.7
(-1) 		241.9
(-0.9) 		179.4
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 347.3
(-1.6)
P 		383.3
(-0.7)
P 		309.6
(-2.6)
P 		524.5
(3)
P 		292.4
(-3)
P 		479.9
(1.8)
P 		232
B 450.9
(1.2)
P 		311
(-2.6)
P 		318.8
(-2.4)
P 		297.5
(-3)
P 		324.7
(-2.3)
P 		515.4
(3)
P 		218
C 308.7
(-1.4)
P 		235.8
(-3)
P 		348.8
(-0.6)
P 		268.1
(-2.3)
P 		311.3
(-1.4)
P 		516.5
(3)
P 		281
avr 369
(-1.2) 		310
(-3) 		325.7
(-2.5) 		363.4
(-1.3) 		309.5
(-3) 		503.9
(3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 112
(3)
P 		48.5
(-1)
P 		64
(-0)
A 		16.6
(-3)
A 		95
B 130.5
(3)
P 		67.3
(-1.6)
A 		52.5
(-2.6)
P 		47.4
(-3)
P 		83
C 122.4
(3)
P 		65.9
(-0.8)
M 		88.7
(0.7)
P 		34.1
(-3)
M 		88
avr 121.6
(3) 		60.6
(-1.1) 		68.4
(-0.6) 		32.7
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 64
(-3)
P 		136.3
(3)
P 		67.4
(-2.7)
P 		133
(2.7)
P 		88.2
(-1)
P 		116.9
(1.4)
P 		72
B 156.9
(1.2)
P 		103.5
(-1.6)
P 		77.4
(-3)
P 		78.8
(-2.9)
P 		131.9
(-0.2)
P 		192.2
(3)
P 		115
C 114.4
(0.1)
P 		71.9
(-2.1)
P 		88.8
(-1.2)
P 		53.9
(-3)
P 		100.7
(-0.6)
P 		172.9
(3)
P 		119
avr 111.8
(-0.5) 		103.9
(-1.1) 		77.9
(-3) 		88.6
(-2.2) 		106.9
(-0.9) 		160.7
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184553_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1800
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.9 NCBI
Target Description Y52B11A.9 /REP_DB=WormBase Gene ID /WP=CE20297 /TR=Q9XWF2 /GB=CAA21720.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060459 NCBI Caenorhabditis elegans Y52B11A.9 (Y52B11A.9) mRNA, complete cds. 11/11 None
SNAP00000015593 ENSEMBL cdna:SNAP chromosome:CEL140:I:11038758:11061001:-1 10/11 None
GENEFINDER00000015602 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11042217:11046944:-1 11/11 None
Y52B11A.9 ENSEMBL cdna:known chromosome:CEL140:I:11042217:11046952:-1 gene:Y52B11A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11042147-11046875(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11A.9
Entrez Gene 173005 Entrez gene
SwissProt Q9XWF2 EMBL-EBI
WormBase CE20297 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265079_AT Kin17 DNA-binding protein-related at
CANINE:1589039_AT similar to HsKin17 protein cfa
CANINE_2:CFA.2691.1.S1_S_AT similar to HsKin17 protein cfa
CANINE_2:CFAAFFX.8480.1.S1_S_AT similar to HsKin17 protein cfa
CANINE_2:CFAAFFX.8483.1.S1_AT similar to HsKin17 protein cfa
DROSOPHILA_2:1630416_AT dm
DROSGENOME1:144027_AT dm
CHICKEN:GGAAFFX.4215.2.S1_AT similar to HsKin17 protein; antigenic determinant of recA protein (mouse) homolog gga
CHICKEN:GGAAFFX.4215.3.S1_S_AT similar to HsKin17 protein; antigenic determinant of recA protein (mouse) homolog gga
HG-U133A:205664_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
HG-U133_PLUS_2:205664_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
HG-FOCUS:205664_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
HG-U133A_2:205664_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
U133_X3P:G13124882_3P_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
HG-U95AV2:37778_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
HU35KSUBC:RC_AA017130_AT KIN, antigenic determinant of recA protein homolog (mouse) hs
MU11KSUBB:X58472_AT antigenic determinant of rec-A protein mm
MU11KSUBB:X58472_G_AT antigenic determinant of rec-A protein mm
MG-U74AV2:160842_AT antigenic determinant of rec-A protein mm
MOE430A:1427317_AT antigenic determinant of rec-A protein mm
MOUSE430A_2:1427317_AT antigenic determinant of rec-A protein mm
MOUSE430_2:1427317_AT antigenic determinant of rec-A protein mm
MU19KSUBB:TC30520_AT Antigenic determinant of rec-A protein, mRNA (cDNA clone MGC:18413 IMAGE:3673830) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21720 Hypothetical protein Y52B11A.9 [Caenorhabditis elegans] ref|NP_492860.1| Y52B11A.9 [Caenorhabditis elegans] 0.0
blast CAA21720 Hypothetical protein Y52B11A.9 [Caenorhabditis elegans] ref|NP_492860.1| Y52B11A.9 [Caenorhabditis elegans] 1.0E-151
blast CAE56163 Hypothetical protein CBG23783 [Caenorhabditis briggsae] 1.0E-134
blast CAE56163 Hypothetical protein CBG23783 [Caenorhabditis briggsae] 1.0E-129
blast CAE56163 Hypothetical protein CBG23783 [Caenorhabditis briggsae] 1.0E-97
blast EAA45011 ENSANGP00000023646 [Anopheles gambiae str. PEST] ref|XP_311588.2| ENSANGP00000023646 [Anopheles gambiae str. PEST] 4.0E-82
Sequence
Target Sequence 
>C. ELEGANS:184553_S_AT
ggtgtggcgtcggcgaaaatctcgattttcgatatgccaaaagtcaaaaaagaggatccg
gatgagccgggaccatcacaaccatcacgcaaaagtggtaaaaagagatcccggagccgg
agcccggccgccaaaaaattctcgaaaaagtcagcgctagatgagattaaggagatggag
gagaggaaaaaggagcggaagaatcggaaggattattggatgagagaggggattgttgtt
aaggttatcacaaaatcacttggctccgagtactacaaagcgaagggagtcgtcagaaag
gtggtggatgactatacggctcaggtgaagcttgatgatggtactgtagtgaaattggat
caggaacacgtggaaacagtaatcccatcgcttggccggcagatgatgattgttaatgga
gcttataggggtcaagaagcgaccctcgaatcgatcgacgagaagcgcttcagtcttcgg
ctcaaaatcgcgtcgggacccacaagagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTGGCGTCGGCGAAAATCTCGA 374 499 673 Antisense
TCCGGATGAGCCGGGACCATCACAA 286 593 729 Antisense
ACCATCACAACCATCACGCAAAAGT 134 87 744 Antisense
AAATCACTTGGCTCCGAGTACTACA 346 117 925 Antisense
GGTGGATGACTATACGGCTCAGGTG 53 499 975 Antisense
GAAACAGTAATCCCATCGCTTGGCC 618 355 1045 Antisense
ATCGCTTGGCCGGCAGATGATGATT 215 37 1059 Antisense
AGAAGCGACCCTCGAATCGATCGAC 299 73 1107 Antisense
GACGAGAAGCGCTTCAGTCTTCGGC 479 379 1129 Antisense
TCAGTCTTCGGCTCAAAATCGCGTC 317 623 1142 Antisense
AATCGCGTCGGGACCCACAAGAGGA 243 165 1158 Antisense
Sequence Source Affymetrix Proprietary Database