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[184552_at]

Description F38E1.10 /REP_DB=WormBase Gene ID /WP=CE04528 /TR=Q20159 /GB=AAA83476.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 24.7
(3)
A 		2.7
(-3)
A 		7.1
(-1.8)
A 		6.6
(-1.9)
A 		22
B 29.9
(1.7)
A 		9
(-1.9)
A 		37.6
(3)
A 		2.3
(-3)
A 		35
C 10.2
(-2.1)
A 		5.5
(-3)
A 		6.5
(-2.8)
A 		35.8
(3)
A 		30
avr 21.6
(3) 		5.7
(-3) 		17.1
(1.3) 		14.9
(0.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 7.2
(-2.5)
A 		19.8
(-0.9)
A 		51.4
(3)
A 		3.1
(-3)
A 		25.3
(-0.2)
A 		5.1
(-2.8)
A 		48
B 26.6
(1)
A 		38.5
(3)
A 		3
(-3)
A 		11.9
(-1.5)
A 		6.6
(-2.4)
A 		3
(-3)
A 		36
C 4.3
(-2.5)
A 		7.4
(-1.8)
A 		27.3
(3)
A 		2.4
(-3)
A 		4.3
(-2.5)
A 		4.8
(-2.4)
A 		25
avr 12.7
(-0.8) 		21.9
(1.6) 		27.2
(3) 		5.8
(-2.6) 		12.1
(-1) 		4.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9
(3)
A 		0.6
(-3)
A 		1.9
(-2.1)
A 		1
(-2.7)
A 		8
B 9.5
(3)
A 		2.2
(-1.9)
A 		8.7
(2.5)
A 		0.5
(-3)
A 		9
C 3.4
(-0.5)
A 		1.6
(-3)
A 		2.3
(-2)
A 		6
(3)
A 		4
avr 7.3
(3) 		1.5
(-3) 		4.3
(-0.1) 		2.5
(-2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		7
(0.6)
A 		11.2
(3)
A 		0.8
(-3)
A 		7.6
(0.9)
A 		1.2
(-2.8)
A 		10
B 9.3
(1.3)
A 		12.8
(3)
A 		0.7
(-3)
A 		3.1
(-1.8)
A 		2.7
(-2)
A 		1.1
(-2.8)
A 		12
C 1.6
(-2)
A 		2.3
(-1.3)
A 		7
(3)
A 		0.5
(-3)
A 		1.4
(-2.2)
A 		1.6
(-2)
A 		7
avr 4.1
(-0.2) 		7.4
(3) 		6.3
(1.9) 		1.5
(-2.8) 		3.9
(-0.4) 		1.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12039
Sequence Type Exemplar sequence
Representative Public ID F38E1.10 NCBI
Target Description F38E1.10 /REP_DB=WormBase Gene ID /WP=CE04528 /TR=Q20159 /GB=AAA83476.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072757 NCBI Caenorhabditis elegans F38E1.10 (F38E1.10) mRNA, complete cds. 11/11 None
SNAP00000006029 ENSEMBL cdna:SNAP chromosome:CEL140:V:8376617:8378064:-1 11/11 None
GENEFINDER00000006033 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8376617:8378064:-1 9/11 None
F38E1.10 ENSEMBL cdna:known chromosome:CEL140:V:8376617:8378064:-1 gene:F38E1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8376617-8378065(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E1.10
Entrez Gene 185466 Entrez gene
SwissProt Q20159 EMBL-EBI
WormBase CE04528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83476 Hypothetical protein F38E1.10 [Caenorhabditis elegans] ref|NP_505158.1| F38E1.10 [Caenorhabditis elegans] 1.0E-175
blast AAA83476 Hypothetical protein F38E1.10 [Caenorhabditis elegans] ref|NP_505158.1| F38E1.10 [Caenorhabditis elegans] 1.0E-173
blast CAE66063 Hypothetical protein CBG11276 [Caenorhabditis briggsae] 1.0E-118
blast CAE66063 Hypothetical protein CBG11276 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:184552_AT
tccaaacagaatcccgtcagtgaaatgtttcactagaaatcgattatttgatatggagag
cgctatcgtggagcaatacagaaaagatggaaagttgccacttgagaaaacagctcttca
tttgactgaagttggatgtattgagtatggtggatcaactattattggagaagatacgac
aaccaagaaatcaggaggaatcactctaccaccaactgtgctcccagaagattgcaactg
ctcgaaacctccgcaacttataacgcaaactatctttgataaacaatatgcctttaactt
tccacaaacaaaattcacattcggaacccctagttttacttatactgtcggatgtcaaca
tgtatctatgatctgttcatcatctcaaaaggcaattatgttcttcaatgatcaatatat
tatcaatggaaatgacatccttgatgtggcagcaaagtacaacttgcattgcgattctgg
agttgctaaatggaaattcgatgaaccatcggagcaaaagttcaaggatctactgggaat
taactcaattgagctttcccatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAACAGAATCCCGTCAGTGAAA 694 585 315 Antisense
GAGCGCTATCGTGGAGCAATACAGA 595 385 372 Antisense
TCAGGAGGAATCACTCTACCACCAA 311 623 505 Antisense
CACCAACTGTGCTCCCAGAAGATTG 505 201 524 Antisense
AAGATTGCAACTGCTCGAAACCTCC 610 153 542 Antisense
GAAACCTCCGCAACTTATAACGCAA 448 357 558 Antisense
ACAATATGCCTTTAACTTTCCACAA 336 115 597 Antisense
CAAAATTCACATTCGGAACCCCTAG 55 191 623 Antisense
GTTTTACTTATACTGTCGGATGTCA 205 449 647 Antisense
GTACAACTTGCATTGCGATTCTGGA 230 461 771 Antisense
TAACTCAATTGAGCTTTCCCATTTG 272 639 855 Antisense
Sequence Source Affymetrix Proprietary Database