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[184550_at]

Description Y47D3A.11 /REP_DB=WormBase Gene ID /WP=CE24327 /TR=Q9U2D0 /GB=CAB57891.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 22      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 10.1
(-3)
A 		63.3
(3)
A 		11.3
(-2.9)
A 		60.1
(2.6)
A 		53
B 81.5
(3)
A 		2.8
(-3)
A 		48.8
(0.5)
A 		72.2
(2.3)
A 		79
C 97.1
(3)
A 		26.7
(-3)
A 		32.4
(-2.5)
A 		55.5
(-0.5)
A 		70
avr 62.9
(3) 		30.9
(-3) 		30.8
(-3) 		62.6
(2.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 18.8
(-3)
A 		51
(-1.6)
A 		61.4
(-1.1)
A 		34.8
(-2.3)
A 		119.5
(1.5)
A 		152.2
(3)
P 		133
B 38
(-3)
A 		60
(-1.4)
A 		37.8
(-3)
A 		72
(-0.6)
A 		81.3
(0.1)
M 		122
(3)
P 		84
C 37.5
(-3)
A 		89.8
(1)
A 		67.1
(-0.7)
A 		39.3
(-2.9)
A 		77
(0.1)
P 		115.2
(3)
P 		78
avr 31.4
(-3) 		66.9
(-0.8) 		55.4
(-1.5) 		48.7
(-1.9) 		92.6
(0.7) 		129.8
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.7
(-2.6)
A 		13.7
(3)
A 		3
(-3)
A 		8.8
(0.3)
A 		11
B 26
(3)
A 		0.7
(-3)
A 		11.3
(-0.5)
A 		15.4
(0.5)
A 		25
C 32.1
(3)
A 		7.7
(-3)
A 		11.3
(-2.1)
A 		9.4
(-2.6)
A 		24
avr 20.6
(3) 		7.4
(-3) 		8.5
(-2.5) 		11.2
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.5
(-3)
A 		18.2
(-0.4)
A 		13.4
(-1.2)
A 		8.8
(-2.1)
A 		36.1
(2.8)
A 		37.1
(3)
P 		34
B 13.2
(-2.3)
A 		20
(-1.2)
A 		9.2
(-3)
A 		19.1
(-1.4)
A 		33
(0.9)
M 		45.5
(3)
P 		36
C 13.9
(-1.8)
A 		27.4
(0.8)
A 		17.1
(-1.2)
A 		7.9
(-3)
A 		24.9
(0.3)
P 		38.6
(3)
P 		31
avr 10.2
(-3) 		21.9
(-0.7) 		13.2
(-2.4) 		11.9
(-2.7) 		31.3
(1.2) 		40.4
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6356
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.11 NCBI
Target Description Y47D3A.11 /REP_DB=WormBase Gene ID /WP=CE24327 /TR=Q9U2D0 /GB=CAB57891.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067041 NCBI Caenorhabditis elegans Y47D3A.11 (Y47D3A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000007293 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11218454:11222543:1 11/11 None
SNAP00000007211 ENSEMBL cdna:SNAP chromosome:CEL140:III:11219069:11222543:1 11/11 None
Y47D3A.11 ENSEMBL cdna:known chromosome:CEL140:III:11219330:11222543:1 gene:Y47D3A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11219325-11222539(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.11
Entrez Gene 189976 Entrez gene
SwissProt Q9U2D0 EMBL-EBI
WormBase CE24327 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641146_AT scarlet dm
DROSGENOME1:153393_AT scarlet dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57891 Hypothetical protein Y47D3A.11 [Caenorhabditis elegans] ref|NP_499442.1| Y47D3A.11 [Caenorhabditis elegans] 0.0
blast CAE67634 Hypothetical protein CBG13191 [Caenorhabditis briggsae] 0.0
blast CAB05682 Hypothetical protein C10C6.5 [Caenorhabditis elegans] ref|NP_502164.1| C10C6.5 [Caenorhabditis elegans] 1.0E-137
blast CAB05682 Hypothetical protein C10C6.5 [Caenorhabditis elegans] ref|NP_502164.1| C10C6.5 [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 3.9E-32
Pfam IPR003439 EMBL-EBI ABC transporter 2.1E-35
Pfam IPR003439 EMBL-EBI ABC transporter 7.2E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499442.1 7 258-280,293-310,323-342,362-384,399-421,428-450,518-540
Y47D3A.11 7 258-280,293-310,323-342,362-384,399-421,428-450,518-540
GENEFINDER00000007293 7 336-358,371-388,401-420,440-462,477-499,506-528,596-618
SNAP00000007211 7 335-357,370-387,400-419,439-461,476-498,505-527,595-617
Sequence
Target Sequence 
>C. ELEGANS:184550_AT
ccgccgctagttcgcgagtacgatgaccggatctatccgatttccgcttactacattgcg
aaaatttgctcgtttctgccaattttcacagtcgatggaattattctcgtagtgtcttcc
tactttttggtcggatttccaagcgattttggggtttttttgagacaaatttttacgtgt
atggccattgagtggaatgttgccgcgttgggaattgccgtgtgcgcgactgctccgtca
tacgcaatcgctgtgactgtcactggaccattgctcaccgtattctctctgactggtgga
ctcttcacgaatattgctgaaatgcccgcttggatcaattgggtgcaatatttgtcttgg
tttcgttacggttacgagtcgctagtggtcaatcaatttcaacacgaccaattcgcgaat
atcacgtgtaacgcaaatatgaatgagcaactttgcgagaagagcggcccgattgctatc
aag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCGCTAGTTCGCGAGTACGATG 112 263 1054 Antisense
ACCGGATCTATCCGATTTCCGCTTA 400 89 1079 Antisense
TGCTCGTTTCTGCCAATTTTCACAG 642 581 1120 Antisense
GAATTATTCTCGTAGTGTCTTCCTA 509 325 1151 Antisense
TGTCTTCCTACTTTTTGGTCGGATT 479 557 1166 Antisense
CCGCGTTGGGAATTGCCGTGTGCGC 266 261 1256 Antisense
TACGCAATCGCTGTGACTGTCACTG 482 649 1294 Antisense
ACCGTATTCTCTCTGACTGGTGGAC 381 89 1330 Antisense
TATTGCTGAAATGCCCGCTTGGATC 692 663 1365 Antisense
GGTTACGAGTCGCTAGTGGTCAATC 103 507 1423 Antisense
GAAGAGCGGCCCGATTGCTATCAAG 458 339 1512 Antisense
Sequence Source Affymetrix Proprietary Database