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[184549_at]

Description K05F6.10 /REP_DB=WormBase Gene ID /WP=CE17168 /TR=O44870 /GB=AAB95023.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 166.2
(3)
P 		57.4
(-1.1)
A 		7
(-3)
A 		90.3
(0.1)
A 		159
B 167.6
(3)
A 		13.7
(-3)
A 		32.3
(-2.3)
A 		41.2
(-1.9)
A 		154
C 158.8
(3)
P 		23.4
(-2.9)
A 		20.8
(-3)
A 		82.3
(-0.3)
A 		138
avr 164.2
(3) 		31.5
(-2.5) 		20
(-3) 		71.3
(-0.9) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 94.7
(3)
A 		93.3
(2.9)
P 		63.9
(0)
A 		50.2
(-1.3)
A 		42.5
(-2)
A 		32.3
(-3)
A 		62
B 118.2
(2.6)
P 		125.8
(3)
A 		81
(0.8)
A 		13.1
(-2.6)
A 		49.9
(-0.8)
A 		6
(-3)
A 		120
C 65.1
(1.9)
M 		78.3
(3)
A 		51.9
(0.8)
A 		53.4
(0.9)
A 		55.5
(1.1)
A 		7.1
(-3)
A 		71
avr 92.7
(2.5) 		99.1
(3) 		65.6
(0.6) 		38.9
(-1.3) 		49.3
(-0.6) 		15.1
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 60.5
(3)
P 		12.5
(-1.9)
A 		1.8
(-3)
A 		13.2
(-1.8)
A 		59
B 53.5
(3)
A 		3.4
(-3)
A 		7.5
(-2.5)
A 		8.8
(-2.4)
A 		50
C 52.6
(3)
P 		6.7
(-3)
A 		7.3
(-2.9)
A 		13.9
(-2.1)
A 		46
avr 55.5
(3) 		7.5
(-2.8) 		5.5
(-3) 		12
(-2.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 17.4
(-0.7)
A 		33.2
(3)
P 		13.9
(-1.6)
A 		12.7
(-1.9)
A 		12.8
(-1.8)
A 		7.9
(-3)
A 		25
B 41.1
(2.9)
P 		41.9
(3)
A 		19.7
(-0.4)
A 		3.5
(-2.8)
A 		20.3
(-0.3)
A 		2.2
(-3)
A 		40
C 24.1
(3)
M 		23.9
(2.9)
A 		13.2
(-0)
A 		10.7
(-0.7)
A 		18
(1.3)
A 		2.4
(-3)
A 		22
avr 27.5
(1.9) 		33
(3) 		15.6
(-0.6) 		9
(-2) 		17
(-0.3) 		4.2
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4185
Sequence Type Exemplar sequence
Representative Public ID K05F6.10 NCBI
Target Description K05F6.10 /REP_DB=WormBase Gene ID /WP=CE17168 /TR=O44870 /GB=AAB95023.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061599 NCBI Caenorhabditis elegans K05F6.10 (K05F6.10) mRNA, complete cds. 11/11 None
K05F6.10 ENSEMBL cdna:known chromosome:CEL140:II:1572185:1575351:-1 gene:K05F6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1572183-1575350(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.10
Entrez Gene 187039 Entrez gene
SwissProt O44870 EMBL-EBI
WormBase CE17168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95023 Hypothetical protein K05F6.10 [Caenorhabditis elegans] ref|NP_494000.1| K05F6.10 [Caenorhabditis elegans] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:184549_AT
gcaagacgacacaactccaggtattacgaaaagtgagccaatatctccacttggacatgg
aagtataatgcaagcgcgtaggctggaagaagtttggaagcatccacctaggcgccctaa
ggcctatcaactggatcagagcccccctgaacatcaggctgatttgctgaagtttctaga
ggtccgctatgagaagtcgattgttacagacgctaatgtggatctacttttacaatttgc
aatccgaaaaagtgatctggtggttctggacaagtgcgagacgtttttaatgctgaaatc
taggaaatccataagtgagctgctcaaaatcgctatggaattcagcttggaggccttgaa
ggtaatgaaggcttcagctcagttcactcaaaaaaaggagatttttttagcgggactcgt
agaagagcaaaagaagagacaaccgtcacagcagaaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGACGACACAACTCCAGGTATT 359 321 219 Antisense
GTGAGCCAATATCTCCACTTGGACA 655 481 251 Antisense
AGTTTGGAAGCATCCACCTAGGCGC 679 61 309 Antisense
CGCCCTAAGGCCTATCAACTGGATC 266 255 331 Antisense
GCCCCCCTGAACATCAGGCTGATTT 411 281 359 Antisense
GAAGTTTCTAGAGGTCCGCTATGAG 459 335 387 Antisense
GTGGATCTACTTTTACAATTTGCAA 676 489 436 Antisense
GATCTGGTGGTTCTGGACAAGTGCG 552 417 472 Antisense
GGAAATCCATAAGTGAGCTGCTCAA 535 525 521 Antisense
ATGAAGGCTTCAGCTCAGTTCACTC 613 43 583 Antisense
GAGACAACCGTCACAGCAGAAGGAA 190 393 654 Antisense
Sequence Source Affymetrix Proprietary Database