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[184548_s_at]

Description F58G11.1B /REP_DB=WormBase Gene ID /WP=CE20894 /TR=Q9XVL7 /GB=CAB03156.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 75      6grp_total > 35      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 684.8
(1.3)
P 		784.5
(3)
P 		726.6
(2)
P 		434.5
(-3)
P 		350
B 756.9
(2.4)
P 		705.6
(1.1)
P 		780.7
(3)
P 		548.9
(-3)
P 		232
C 751
(1.7)
P 		741.4
(1.5)
P 		832.9
(3)
P 		465
(-3)
P 		368
avr 730.9
(2) 		743.8
(2.3) 		780.1
(3) 		482.8
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 848.9
(1.1)
P 		947
(3)
P 		758
(-0.6)
P 		650.8
(-2.7)
P 		633.9
(-3)
P 		827.3
(0.7)
P 		313
B 839
(1.9)
P 		869.6
(3)
P 		865.4
(2.8)
P 		706
(-3)
P 		816.9
(1.1)
P 		784.6
(-0.1)
P 		164
C 947.3
(3)
P 		803.9
(-0.3)
P 		887.1
(1.6)
P 		759.6
(-1.3)
P 		687.3
(-3)
P 		851.4
(0.8)
P 		260
avr 878.4
(3) 		873.5
(2.8) 		836.8
(1.6) 		705.5
(-3) 		712.7
(-2.8) 		821.1
(1) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 249.4
(3)
P 		170.3
(0.4)
P 		189.9
(1.1)
P 		63.6
(-3)
P 		186
B 241.4
(3)
P 		174.3
(-0.2)
P 		180.9
(0.1)
P 		117
(-3)
P 		124
C 248.6
(1.8)
P 		213.2
(0.8)
P 		290.3
(3)
P 		78.4
(-3)
P 		212
avr 246.5
(3) 		185.9
(0.7) 		220.4
(2) 		86.3
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 156.5
(-3)
P 		336.8
(3)
P 		165.1
(-2.7)
P 		165.1
(-2.7)
P 		191.3
(-1.8)
P 		201.4
(-1.5)
P 		180
B 291.9
(1.3)
P 		289.4
(1.2)
P 		210.1
(-2)
P 		187
(-3)
P 		331.9
(3)
P 		292.6
(1.4)
P 		145
C 351.1
(3)
P 		245.3
(-0.2)
P 		225.8
(-0.8)
P 		152.8
(-3)
P 		222.4
(-0.9)
P 		285
(1)
P 		198
avr 266.5
(1.8) 		290.5
(3) 		200.3
(-1.4) 		168.3
(-3) 		248.5
(0.9) 		259.7
(1.5) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13047
Sequence Type Exemplar sequence
Representative Public ID F58G11.1B NCBI
Target Description F58G11.1B /REP_DB=WormBase Gene ID /WP=CE20894 /TR=Q9XVL7 /GB=CAB03156.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073980(11), NM_073981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073980 NCBI Caenorhabditis elegans F58G11.1a (F58G11.1) mRNA, complete cds. 11/11 A 
NM_073981 NCBI Caenorhabditis elegans F58G11.1b (F58G11.1) mRNA, complete cds. 11/11 A 
SNAP00000001239 ENSEMBL cdna:SNAP chromosome:CEL140:V:13663883:13666547:1 11/11 None
GENEFINDER00000001250 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13663883:13666547:1 11/11 None
F58G11.1a ENSEMBL cdna:known chromosome:CEL140:V:13663853:13666826:1 gene:F58G11.1 11/11 A 
F58G11.1b ENSEMBL cdna:known chromosome:CEL140:V:13663883:13666811:1 gene:F58G11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13663882-13666547(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03150 Hypothetical protein F58G11.1a [Caenorhabditis elegans] ref|NP_506381.1| F58G11.1a [Caenorhabditis elegans] 0.0
blast CAB03156 Hypothetical protein F58G11.1b [Caenorhabditis elegans] ref|NP_506382.1| F58G11.1b [Caenorhabditis elegans] 0.0
blast CAE66267 Hypothetical protein CBG11511 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506381.1 1 144-166
NP_506382.1 1 144-166
F58G11.1a 1 144-166
F58G11.1b 1 144-166
SNAP00000001239 1 144-166
GENEFINDER00000001250 1 144-166
Sequence
Target Sequence 
>C. ELEGANS:184548_S_AT
aaatgctcattgatccaaccgtggagaacagcgttgatttgaaaaaagaacgcgaagttc
gtattcaggatgttatcgattctttggcaaagttgaaagaaagtaaaggagaacaagctg
atgatggagaacaacgtgagagaattgaggctctcttgaagacaatcgatgaggattccg
atggaattgtcgataagcagctagtcttggaagttatcgaacttcttgaaaaacatacag
atgttcacgtatcggcagctcaaatggcgtccatgattggaacactaaagaaagaagatg
aagttgctggattaactgaggagatcagaaaagttcaatccggaaattatcagatgccga
ttttgccaacgggtccatcatctgcggatgcattcaatcaaccacagggagtgtacacgg
catcaaagcaagttccagcgagaagtgaacaagagggagtggagcaaaagcaacaggtca
catccacactgcaacaaaattcctccaagacgtcgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTCATTGATCCAACCGTGGA 262 119 1766 Antisense
GGATGTTATCGATTCTTTGGCAAAG 585 513 1833 Antisense
GGAATTGTCGATAAGCAGCTAGTCT 629 533 1948 Antisense
ACAGATGTTCACGTATCGGCAGCTC 130 109 2002 Antisense
CGTATCGGCAGCTCAAATGGCGTCC 547 247 2013 Antisense
GATGCCGATTTTGCCAACGGGTCCA 204 383 2118 Antisense
CTGCGGATGCATTCAATCAACCACA 76 237 2147 Antisense
ACCACAGGGAGTGTACACGGCATCA 359 85 2166 Antisense
CACGGCATCAAAGCAAGTTCCAGCG 317 199 2181 Antisense
GTCACATCCACACTGCAACAAAATT 486 465 2242 Antisense
CAAAATTCCTCCAAGACGTCGTCTT 108 189 2260 Antisense
Sequence Source Affymetrix Proprietary Database