[Home] | [Total List]

[184547_at]

Description K12C11.3 /REP_DB=WormBase Gene ID /WP=CE18057 /TR=O44996 /GB=AAK18970.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 85      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > 04      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 241.2
(-2)
P 		237.9
(-2.1)
P 		203.5
(-3)
P 		428.3
(3)
P 		225
B 274.5
(-2.3)
P 		282.6
(-2)
P 		249.5
(-3)
P 		452
(3)
P 		203
C 263.1
(-2.8)
P 		275.3
(-2.5)
A 		251.6
(-3)
P 		550.3
(3)
P 		299
avr 259.6
(-2.4) 		265.3
(-2.2) 		234.9
(-3) 		476.9
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 245.5
(-3)
P 		247.8
(-3)
P 		362.4
(-1.2)
P 		620.4
(2.9)
P 		629
(3)
P 		596.8
(2.5)
P 		384
B 264.9
(-3)
P 		261.1
(-3)
P 		287
(-2.7)
P 		665.5
(2.2)
P 		732
(3)
P 		626.8
(1.7)
P 		471
C 245.4
(-3)
P 		274.1
(-2.7)
P 		260.5
(-2.8)
P 		684
(2)
P 		602.6
(1.1)
P 		768
(3)
P 		523
avr 251.9
(-3) 		261
(-2.9) 		303.3
(-2.3) 		656.6
(2.9) 		654.5
(2.9) 		663.9
(3) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 87.8
(3)
P 		51.6
(-3)
P 		53.2
(-2.7)
P 		62.7
(-1.2)
P 		36
B 87.5
(1.6)
P 		69.8
(-1.1)
P 		57.8
(-3)
P 		96.3
(3)
P 		39
C 87.1
(0.5)
P 		79.1
(-3)
A 		87.7
(0.8)
P 		92.8
(3)
P 		14
avr 87.5
(3) 		66.8
(-2.8) 		66.2
(-3) 		83.9
(2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 45.3
(-3)
P 		88.1
(-1.2)
P 		78.9
(-1.6)
P 		157.3
(1.7)
P 		189.8
(3)
P 		145.3
(1.2)
P 		145
B 92.2
(-2.4)
P 		86.9
(-2.5)
P 		69.7
(-3)
P 		176.3
(-0.2)
P 		297.4
(3)
P 		233.7
(1.3)
P 		228
C 91
(-2.2)
P 		83.6
(-2.5)
P 		66.3
(-3)
P 		137.6
(-0.8)
P 		195
(1)
P 		257.1
(3)
P 		191
avr 76.2
(-2.8) 		86.2
(-2.4) 		71.6
(-3) 		157.1
(0.3) 		227.4
(3) 		212
(2.4) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24
Sequence Type Exemplar sequence
Representative Public ID K12C11.3 NCBI
Target Description K12C11.3 /REP_DB=WormBase Gene ID /WP=CE18057 /TR=O44996 /GB=AAK18970.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058440
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K12C11.3 ENSEMBL cdna:known chromosome:CEL140:I:1335396:1339011:1 gene:K12C11.3 None
NM_058440 NCBI Caenorhabditis elegans K12C11.3 (K12C11.3) mRNA, complete cds. None
GENEFINDER00000016389 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1338808:1340182:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016390 4/11 Cross Hyb Matching Probes None
SNAP00000016383 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1335395-1339711(+) 96.82 96.82
Public Domain and Genome References
Gene Title
Ensembl K12C11.3
Entrez Gene 187321 Entrez gene
SwissProt O44996 EMBL-EBI
WormBase CE34341 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5375 copper ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18970 Hypothetical protein K12C11.3 [Caenorhabditis elegans] ref|NP_490841.2| K12C11.3 [Caenorhabditis elegans] 0.0
blast CAE74543 Hypothetical protein CBG22300 [Caenorhabditis briggsae] 3.0E-55
blast CAE72800 Hypothetical protein CBG20077 [Caenorhabditis briggsae] 1.0E-47
blast CAC70098 Hypothetical protein F58G6.7 [Caenorhabditis elegans] ref|NP_501714.1| F58G6.7 [Caenorhabditis elegans] 1.0E-46
blast CAE74543 Hypothetical protein CBG22300 [Caenorhabditis briggsae] 3.0E-46
blast CAI59117 Hypothetical protein F58G6.9 [Caenorhabditis elegans] ref|NP_001023247.1| F58G6.9 [Caenorhabditis elegans] 9.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 9.4E-39
Pfam IPR007274 EMBL-EBI Ctr copper transporter 2.6E-15
Pfam IPR007274 EMBL-EBI Ctr copper transporter 7.6E-30
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-11
Pfam IPR007274 EMBL-EBI Ctr copper transporter 1.1E-11
Pfam IPR007274 EMBL-EBI Ctr copper transporter 7.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490841.2 5 40-59,102-124,159-181,226-248,277-299
K12C11.3 5 40-59,102-124,159-181,226-248,277-299
GENEFINDER00000016389 3 28-50,107-129,133-155
Sequence
Target Sequence 
>C. ELEGANS:184547_AT
actcttctcaccaattcacatcggtcaaacgatacttttcatggtgcaactgagtttcag
ctatattctcatgctgcttttcatgacattctcggtttggctcggaatcgccgttgttgt
cggacttggcatcgccatgatgatggacatgatgcaaatgtatttccattttcgaatcca
agagcccatccttttccgtcagtggaagcccacagacaccacaggctacgttttctcctg
tatttccctatttttcatcgcgttttgcctggaattgctgaaattcggaaggcaaagaat
gacgagaactgtgaaggaaaaattggccgtcgattgctgttgctcaacgcctgaaggcat
ttgggagattccggaagagcctgagccgtcgccacgtggcaaactggcatcgttggctcc
caggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagaaaagcttaaaattcgcca
cgccatcggatatttcttcgttggcccgtt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTTCTCACCAATTCACATCGGT 267 101 621 Antisense
GCTATATTCTCATGCTGCTTTTCAT 107 305 680 Antisense
TCATGACATTCTCGGTTTGGCTCGG 413 621 701 Antisense
GAATCGCCGTTGTTGTCGGACTTGG 178 329 725 Antisense
CATTTTCGAATCCAAGAGCCCATCC 511 215 787 Antisense
CACAGACACCACAGGCTACGTTTTC 106 195 831 Antisense
TCATCGCGTTTTGCCTGGAATTGCT 410 619 875 Antisense
TCGATTGCTGTTGCTCAACGCCTGA 626 603 950 Antisense
ACGTGGCAAACTGGCATCGTTGGCT 333 95 1014 Antisense
TTAAAATTCGCCACGCCATCGGATA 98 683 1088 Antisense
TCGGATATTTCTTCGTTGGCCCGTT 387 605 1106 Antisense
Sequence Source Affymetrix Proprietary Database