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[184546_s_at]

Description C34F11.8 /REP_DB=WormBase Gene ID /WP=CE04168 /TR=Q18464 /GB=AAA85763.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 08      4grp_total > 46      6grp_highest_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1278
1 2 3 4 range
A 1469.8
(3)
P 		627.8
(-1.4)
P 		543.1
(-1.9)
A 		333
(-3)
M 		1137
B 1134.2
(3)
P 		439.2
(-2.9)
P 		444.6
(-2.8)
P 		422.2
(-3)
P 		712
C 1549.9
(3)
P 		586.5
(-1.5)
P 		512.9
(-1.9)
P 		271.5
(-3)
M 		1278
avr 1384.6
(3) 		551.2
(-1.8) 		500.2
(-2.1) 		342.2
(-3) 		1042

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 798
1 2 3 4 5 6 range
A 1332.8
(3)
P 		877.4
(-2.3)
P 		817.9
(-3)
P 		1265.3
(2.2)
P 		867
(-2.4)
P 		888.9
(-2.2)
P 		515
B 1288.2
(3)
P 		880.9
(-1.6)
P 		934.1
(-1)
P 		751.8
(-3)
P 		1085.5
(0.7)
P 		833
(-2.1)
P 		536
C 1549.9
(3)
P 		1094.1
(-0.7)
P 		1218
(0.3)
P 		949.1
(-1.9)
P 		825.6
(-2.9)
P 		809
(-3)
P 		741
avr 1390.3
(3) 		950.8
(-1.8) 		990
(-1.4) 		988.7
(-1.4) 		926
(-2.1) 		843.6
(-3) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 535.2
(3)
P 		136.3
(-1.9)
P 		142
(-1.8)
A 		48.7
(-3)
M 		487
B 361.7
(3)
P 		108.5
(-2.6)
P 		103
(-2.7)
P 		90
(-3)
P 		272
C 513.1
(3)
P 		168.6
(-1.4)
P 		178.8
(-1.3)
P 		45.8
(-3)
M 		467
avr 470
(3) 		137.8
(-1.9) 		141.3
(-1.8) 		61.5
(-3) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 245.7
(-0.2)
P 		312.1
(2.6)
P 		178.1
(-3)
P 		320.9
(3)
P 		261.6
(0.5)
P 		216.4
(-1.4)
P 		143
B 448.2
(3)
P 		293.2
(-0.7)
P 		226.8
(-2.3)
P 		199.1
(-3)
P 		441
(2.8)
P 		310.6
(-0.3)
P 		249
C 574.5
(3)
P 		333.9
(-0.8)
P 		310
(-1.1)
P 		190.9
(-3)
P 		267.2
(-1.8)
P 		270.8
(-1.8)
P 		384
avr 422.8
(3) 		313.1
(-0.5) 		238.3
(-3) 		237
(-3) 		323.3
(-0.2) 		265.9
(-2.1) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184546_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5000
Sequence Type Exemplar sequence
Representative Public ID C34F11.8 NCBI
Target Description C34F11.8 /REP_DB=WormBase Gene ID /WP=CE04168 /TR=Q18464 /GB=AAA85763.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062574 NCBI Caenorhabditis elegans C34F11.8 (C34F11.8) mRNA, complete cds. 11/11 None
SNAP00000021331 ENSEMBL cdna:SNAP chromosome:CEL140:II:5209840:5210760:-1 11/11 None
GENEFINDER00000021344 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5209840:5211696:-1 11/11 None
C34F11.8 ENSEMBL cdna:known chromosome:CEL140:II:5209762:5210943:-1 gene:C34F11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5209837-5210758(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F11.8
Entrez Gene 173892 Entrez gene
SwissProt Q18464 EMBL-EBI
WormBase CE36986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85763 Hypothetical protein C34F11.8 [Caenorhabditis elegans] ref|NP_494975.2| C34F11.8 [Caenorhabditis elegans] 7.0E-66
blast AAA85763 Hypothetical protein C34F11.8 [Caenorhabditis elegans] ref|NP_494975.2| C34F11.8 [Caenorhabditis elegans] 2.0E-63
blast AAA85763 Hypothetical protein C34F11.8 [Caenorhabditis elegans] ref|NP_494975.2| C34F11.8 [Caenorhabditis elegans] 5.0E-57
blast CAE59065 Hypothetical protein CBG02350 [Caenorhabditis briggsae] 5.0E-29
blast CAE59065 Hypothetical protein CBG02350 [Caenorhabditis briggsae] 1.0E-28
blast CAE59065 Hypothetical protein CBG02350 [Caenorhabditis briggsae] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:184546_S_AT
ggcgcacccagaaatgtcaacttgcgatcgtccttattcagtgagagactatagagatga
gctggaaaaggagagaactgaagagccaactgatagcggaaacttcaaggcgagccgccg
ttctgattgggtagatgatgaaattgacgagaaagatctagaatactatttatggagaaa
acgaaggcgtcaatatttaagaacaaaagctgccgcaatgaaaggttacaggttgcggga
gagatatcgtgatagaatggatgaagagagagcagatagtggacctgattatcattatca
ttatcatgaagcccctcgatatggttatagtcgatacggtgatgggtacggtagatatgg
accatacagtggatatggtaactcttattatccatcctatggtggctacagtggttatgg
tggaggctatggcggaggatacggtggaggttacggttatggcggtggtctaatcggaag
tctcgtgaatattggcggtggaagcggactcggaatctctacaccaatcggcggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCACCCAGAAATGTCAACTTGC 214 543 123 Antisense
TCAACTTGCGATCGTCCTTATTCAG 59 631 139 Antisense
GAAACTTCAAGGCGAGCCGCCGTTC 493 351 221 Antisense
AGCCGCCGTTCTGATTGGGTAGATG 684 81 235 Antisense
GAAGCCCCTCGATATGGTTATAGTC 324 343 430 Antisense
GTAACTCTTATTATCCATCCTATGG 130 463 500 Antisense
CATCCTATGGTGGCTACAGTGGTTA 421 211 515 Antisense
GAGGTTACGGTTATGGCGGTGGTCT 360 403 569 Antisense
GCGGTGGTCTAATCGGAAGTCTCGT 651 291 584 Antisense
GTGGAAGCGGACTCGGAATCTCTAC 519 489 620 Antisense
GAATCTCTACACCAATCGGCGGAAT 251 329 635 Antisense
Sequence Source Affymetrix Proprietary Database