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[184544_at]

Description F45C12.6 /REP_DB=WormBase Gene ID /WP=CE10446 /TR=O16744 /GB=AAB66205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 42      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 51.3
(-3)
A 		67.4
(2.3)
P 		63.1
(0.9)
A 		69.4
(3)
A 		18
B 9.6
(-3)
A 		62.2
(3)
A 		32.1
(-0.4)
A 		28.6
(-0.8)
A 		53
C 52.5
(-0.1)
P 		80.5
(3)
P 		64.5
(1.2)
P 		25.9
(-3)
A 		55
avr 37.8
(-3) 		70
(3) 		53.2
(-0.1) 		41.3
(-2.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 49.7
(0.1)
A 		42.7
(-0.4)
A 		32.4
(-1.1)
M 		2.2
(-3)
A 		35
(-0.9)
A 		95.5
(3)
P 		93
B 44
(-0.8)
M 		26.2
(-2.2)
A 		22
(-2.5)
A 		15.8
(-3)
A 		43.8
(-0.8)
A 		91.5
(3)
P 		76
C 31.9
(-2.1)
A 		24.8
(-2.4)
A 		77.4
(0.1)
P 		13.1
(-3)
A 		48.2
(-1.3)
A 		137.8
(3)
P 		125
avr 41.9
(-1.1) 		31.2
(-1.7) 		43.9
(-0.9) 		10.4
(-3) 		42.3
(-1) 		108.3
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.7
(3)
A 		14.6
(0.1)
P 		16.5
(1.4)
A 		10.2
(-3)
A 		9
B 3.1
(-3)
A 		15.4
(3)
A 		7.4
(-0.9)
A 		6.1
(-1.5)
A 		12
C 17.4
(1.1)
P 		23.2
(3)
P 		22.5
(2.8)
P 		4.4
(-3)
A 		19
avr 13.1
(0.4) 		17.7
(3) 		15.5
(1.8) 		6.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 9.2
(-0.7)
A 		15.2
(0.9)
A 		7.1
(-1.3)
M 		0.6
(-3)
A 		10.5
(-0.4)
A 		23.3
(3)
P 		23
B 15.3
(-0.8)
M 		8.7
(-2.1)
A 		5.3
(-2.8)
A 		4.2
(-3)
A 		17.8
(-0.3)
A 		34.1
(3)
P 		30
C 11.8
(-1.7)
A 		7.6
(-2.3)
A 		19.7
(-0.6)
P 		2.6
(-3)
A 		15.6
(-1.2)
A 		46.1
(3)
P 		44
avr 12.1
(-1.2) 		10.5
(-1.5) 		10.7
(-1.5) 		2.5
(-3) 		14.6
(-0.7) 		34.5
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4800
Sequence Type Exemplar sequence
Representative Public ID F45C12.6 NCBI
Target Description F45C12.6 /REP_DB=WormBase Gene ID /WP=CE10446 /TR=O16744 /GB=AAB66205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061656 NCBI Caenorhabditis elegans F45C12.6 (F45C12.6) mRNA, complete cds. 11/11 None
SNAP00000033191 ENSEMBL cdna:SNAP chromosome:CEL140:II:1722786:1724082:1 11/11 None
GENEFINDER00000033210 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1722786:1726190:1 11/11 None
F45C12.6 ENSEMBL cdna:known chromosome:CEL140:II:1722781:1724117:1 gene:F45C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1722784-1724081(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.6
Entrez Gene 173540 Entrez gene
SwissProt O16744 EMBL-EBI
WormBase CE10446 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66205 Hypothetical protein F45C12.6 [Caenorhabditis elegans] ref|NP_494057.1| F45C12.6 [Caenorhabditis elegans] 0.0
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 0.0
blast AAB66205 Hypothetical protein F45C12.6 [Caenorhabditis elegans] ref|NP_494057.1| F45C12.6 [Caenorhabditis elegans] 1.0E-177
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 1.0E-124
blast AAB71029 Hypothetical protein K02E7.9 [Caenorhabditis elegans] ref|NP_493902.1| K02E7.9 [Caenorhabditis elegans] 2.0E-55
blast AAB70996 Hypothetical protein M01D1.3 [Caenorhabditis elegans] ref|NP_493890.1| M01D1.3 [Caenorhabditis elegans] 9.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-31
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494057.1 1 315-334
F45C12.6 1 315-334
SNAP00000033191 1 315-334
Sequence
Target Sequence 
>C. ELEGANS:184544_AT
tctccatccgagcaatctgacgcggttctgttagttggggataaaaagcttcatgttaac
aaggcttttctctcctgccactctacctatttccgttctctgttcgcaaagcaagctgac
accgggatcctgattgaaggggtcacctacgacgagttcgggcttctcatgagtaccatc
tatcctgaaatggttctgtcgacagacaaaaccgccgagctactcctcagactgggagat
cgtttcaagatgccagctgtaatgcaccatgttgaaacccgacttattgagtggacccag
ttgacagaccaaaaattaatgttcctcgcggacaagttcaaattgcaaaagctgctggaa
agaaccataagctggatcgacttcttggatgattccagaatgctcaaagaatctgctgag
tactctgaactgtcggattcaacgaaggccaagatcttggatcgtctcaattcattgcca
ttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCATCCGAGCAATCTGACGCGG 360 609 409 Antisense
ATCTGACGCGGTTCTGTTAGTTGGG 442 33 423 Antisense
CCGTTCTCTGTTCGCAAAGCAAGCT 189 265 501 Antisense
TGAAGGGGTCACCTACGACGAGTTC 370 439 543 Antisense
GCTTCTCATGAGTACCATCTATCCT 676 305 570 Antisense
GAGCTACTCCTCAGACTGGGAGATC 91 389 625 Antisense
GGAGATCGTTTCAAGATGCCAGCTG 227 519 643 Antisense
AATGCACCATGTTGAAACCCGACTT 663 165 669 Antisense
AACCCGACTTATTGAGTGGACCCAG 253 111 684 Antisense
TAATGTTCCTCGCGGACAAGTTCAA 221 633 725 Antisense
GGATCGTCTCAATTCATTGCCATTG 184 513 867 Antisense
Sequence Source Affymetrix Proprietary Database