[Home] | [Total List]

[184543_s_at]

Description Y57G7A.5 /REP_DB=WormBase Gene ID /WP=CE19634 /TR=O76621 /GB=AAC26294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 41.3
(1.4)
A 		32.7
(0.3)
A 		54.3
(3)
A 		6.5
(-3)
A 		48
B 2
(-3)
A 		40
(3)
A 		33
(1.9)
A 		36.1
(2.4)
A 		38
C 7.7
(-3)
A 		59.3
(1.7)
A 		42
(0.1)
A 		73.6
(3)
M 		66
avr 17
(-3) 		44
(3) 		43.1
(2.8) 		38.7
(1.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 37.7
(-1.2)
A 		18.8
(-3)
A 		28.9
(-2)
A 		38.7
(-1.1)
A 		81.4
(3)
P 		76.6
(2.5)
P 		63
B 23.7
(-1.8)
A 		16.2
(-2.3)
A 		63.1
(0.8)
A 		4.9
(-3)
A 		96.4
(3)
P 		77.4
(1.8)
P 		92
C 19.9
(-2.8)
A 		42.7
(-0.8)
A 		32.9
(-1.7)
A 		17.6
(-3)
A 		87.2
(3)
P 		87.4
(3)
P 		70
avr 27.1
(-2.4) 		25.9
(-2.5) 		41.6
(-1.1) 		20.4
(-3) 		88.3
(3) 		80.5
(2.3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15
(3)
A 		7.1
(-0.4)
A 		14.2
(2.7)
A 		1
(-3)
A 		14
B 0.6
(-3)
A 		9.9
(3)
A 		7.6
(1.5)
A 		7.7
(1.6)
A 		9
C 2.5
(-3)
A 		17
(3)
A 		14.7
(2)
A 		12.4
(1.1)
M 		15
avr 6
(-3) 		11.3
(2.1) 		12.2
(3) 		7
(-2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.9
(-2.8)
A 		6.7
(-2.9)
A 		6.3
(-3)
A 		9.8
(-1.9)
A 		24.6
(3)
P 		18.7
(1.1)
P 		18
B 8.3
(-1.9)
A 		5.4
(-2.4)
A 		15.3
(-0.8)
A 		1.3
(-3)
A 		39.2
(3)
P 		28.9
(1.4)
P 		38
C 7.4
(-2.1)
A 		13
(-0.8)
A 		8.4
(-1.9)
A 		3.5
(-3)
A 		28.2
(2.8)
P 		29.2
(3)
P 		26
avr 7.5
(-2.4) 		8.4
(-2.2) 		10
(-1.8) 		4.9
(-3) 		30.7
(3) 		25.6
(1.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184543_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5148
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.5 NCBI
Target Description Y57G7A.5 /REP_DB=WormBase Gene ID /WP=CE19634 /TR=O76621 /GB=AAC26294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061536 NCBI Caenorhabditis elegans Y57G7A.5 (Y57G7A.5) mRNA, complete cds. 11/11 A 
SNAP00000014152 ENSEMBL cdna:SNAP chromosome:CEL140:II:1273221:1276461:-1 11/11 None
GENEFINDER00000014162 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1269424:1277407:-1 11/11 None
Y57G7A.5 ENSEMBL cdna:known chromosome:CEL140:II:1273213:1275497:-1 gene:Y57G7A.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1273211-1275496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.5
Entrez Gene 173505 Entrez gene
SwissProt O76621 EMBL-EBI
WormBase CE19634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26295 Serpentine receptor, class w protein 66 [Caenorhabditis elegans] ref|NP_493936.2| Serpentine Receptor, class W family member (srw-66) [Caenorhabditis elegans] 0.0
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-120
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-119
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-115
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 3.0E-76
blast CAE62921 Hypothetical protein CBG07119 [Caenorhabditis briggsae] 3.0E-38
blast CAE62921 Hypothetical protein CBG07119 [Caenorhabditis briggsae] 8.0E-38
blast AAL27258 Hypothetical protein Y57G7A.11 [Caenorhabditis elegans] ref|NP_740969.1| Y57G7A.11 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014162 8 7-29,464-483,490-512,552-571,583-605,661-683,708-730,745-767
Sequence
Target Sequence 
>C. ELEGANS:184543_S_AT
ttcgctccgagttgacagtggacgttgggccagtctcctcggtaaccagtaaaacttcgg
gaattgaggccaattttatcgttaaaccgtataagccgctggaaacggagctcgccaccc
aaattgtccgtgtgaaccgggagctggagattctcaaaatgcaactcccaaactgtgatc
attttccgaatttgatgaatcccgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCTCCGAGTTGACAGTGGACGT 258 697 440 Antisense
TGACAGTGGACGTTGGGCCAGTCTC 105 571 452 Antisense
TGAGGCCAATTTTATCGTTAAACCG 1 403 504 Antisense
ATCGTTAAACCGTATAAGCCGCTGG 206 35 517 Antisense
ATAAGCCGCTGGAAACGGAGCTCGC 705 23 530 Antisense
TCGCCACCCAAATTGTCCGTGTGAA 257 599 551 Antisense
TTGTCCGTGTGAACCGGGAGCTGGA 393 705 563 Antisense
GAACCGGGAGCTGGAGATTCTCAAA 700 345 573 Antisense
GATTCTCAAAATGCAACTCCCAAAC 691 431 588 Antisense
ACTCCCAAACTGTGATCATTTTCCG 28 99 603 Antisense
TTCCGAATTTGATGAATCCCGTGCA 407 693 623 Antisense
Sequence Source Affymetrix Proprietary Database