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[184542_at]

Description Y57G7A.5 /REP_DB=WormBase Gene ID /WP=CE19634 /TR=O76621 /GB=AAC26294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 1.9
(-2.8)
A 		6.4
(1.9)
A 		1.7
(-3)
A 		7.5
(3)
A 		6
B 1.3
(-3)
A 		4.2
(3)
A 		1.7
(-2.2)
A 		2.4
(-0.7)
A 		3
C 0.9
(-3)
A 		3.5
(-2.6)
A 		2
(-2.8)
A 		38.6
(3)
A 		38
avr 1.4
(-3) 		4.7
(-1.7) 		1.8
(-2.8) 		16.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 27.6
(2.5)
A 		0.9
(-3)
A 		30.2
(3)
A 		1.3
(-2.9)
A 		2.9
(-2.6)
A 		29.5
(2.9)
A 		29
B 1.4
(-3)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		1.5
(-3)
A 		5.5
(-1.8)
A 		21.1
(3)
A 		20
C 0.8
(-3)
A 		1.5
(-2.5)
A 		2
(-2.1)
A 		9.2
(3)
A 		5.9
(0.6)
A 		6.5
(1.1)
A 		8
avr 9.9
(-0.1) 		1.3
(-3) 		11.4
(0.4) 		4
(-2.1) 		4.8
(-1.8) 		19
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.7
(-1.7)
A 		1.4
(3)
A 		0.5
(-3)
A 		1.1
(1)
A 		1
B 0.4
(-3)
A 		1
(3)
A 		0.4
(-3)
A 		0.5
(-2)
A 		1
C 0.3
(-3)
A 		1
(-2.3)
A 		0.7
(-2.6)
A 		6.5
(3)
A 		6
avr 0.5
(-3) 		1.1
(-1.4) 		0.5
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.1
(1.2)
A 		0.3
(-3)
A 		6.6
(2.5)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		7.2
(3)
A 		7
B 0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		2.3
(-1.5)
A 		7.9
(3)
A 		8
C 0.3
(-3)
A 		0.4
(-2.7)
A 		0.5
(-2.4)
A 		1.8
(1.7)
A 		1.9
(2.1)
A 		2.2
(3)
A 		2
avr 2
(-1.2) 		0.4
(-3) 		2.5
(-0.7) 		0.8
(-2.6) 		1.7
(-1.6) 		5.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5148
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.5 NCBI
Target Description Y57G7A.5 /REP_DB=WormBase Gene ID /WP=CE19634 /TR=O76621 /GB=AAC26294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061536 NCBI Caenorhabditis elegans Y57G7A.5 (Y57G7A.5) mRNA, complete cds. 11/11 A 
SNAP00000014152 ENSEMBL cdna:SNAP chromosome:CEL140:II:1273221:1276461:-1 11/11 None
GENEFINDER00000014162 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1269424:1277407:-1 11/11 None
Y57G7A.5 ENSEMBL cdna:known chromosome:CEL140:II:1273213:1275497:-1 gene:Y57G7A.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1273211-1275496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.5
Entrez Gene 173505 Entrez gene
SwissProt O76621 EMBL-EBI
WormBase CE19634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26295 Serpentine receptor, class w protein 66 [Caenorhabditis elegans] ref|NP_493936.2| Serpentine Receptor, class W family member (srw-66) [Caenorhabditis elegans] 0.0
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-120
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-119
blast AAC26294 Hypothetical protein Y57G7A.5 [Caenorhabditis elegans] ref|NP_493937.1| Y57G7A.5 [Caenorhabditis elegans] 1.0E-115
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 3.0E-76
blast CAE62921 Hypothetical protein CBG07119 [Caenorhabditis briggsae] 3.0E-38
blast CAE62921 Hypothetical protein CBG07119 [Caenorhabditis briggsae] 8.0E-38
blast AAL27258 Hypothetical protein Y57G7A.11 [Caenorhabditis elegans] ref|NP_740969.1| Y57G7A.11 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014162 8 7-29,464-483,490-512,552-571,583-605,661-683,708-730,745-767
Sequence
Target Sequence 
>C. ELEGANS:184542_AT
gctgaaactcggcgagcatgtgctcgatgagcaaactcgtctgagaactcggctttccga
agaatttggtgactttctgaaccgttccaagcgttcgttgacgagaaattttgagacggc
cgacggaaatgtgtatagttttgagaaaaacctgagagaacttctccatttgtacattac
cgttcataatcgagtgaagcaggatgagaaagaggttgccaaacaggacgaattcctcaa
tcaaatcgatcgaaatgagatggagctgaaggatttgagagataatatcagatctcttcg
ctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAAACTCGGCGAGCATGTGCTC 194 297 144 Antisense
TGCTCGATGAGCAAACTCGTCTGAG 484 581 164 Antisense
AACTCGTCTGAGAACTCGGCTTTCC 655 141 177 Antisense
TCGGCTTTCCGAAGAATTTGGTGAC 496 605 192 Antisense
TTTGGTGACTTTCTGAACCGTTCCA 61 667 208 Antisense
ACCGTTCCAAGCGTTCGTTGACGAG 397 87 224 Antisense
GAGAAATTTTGAGACGGCCGACGGA 170 381 246 Antisense
GACGGCCGACGGAAATGTGTATAGT 430 375 258 Antisense
AAACCTGAGAGAACTTCTCCATTTG 678 125 291 Antisense
TCTCCATTTGTACATTACCGTTCAT 539 607 306 Antisense
GATAATATCAGATCTCTTCGCTCCG 268 423 424 Antisense
Sequence Source Affymetrix Proprietary Database