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[184541_s_at]

Description Y67A10A.6 /REP_DB=WormBase Gene ID /WP=CE24567 /TR=Q9U1V3 /GB=CAB60447.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 11      4grp_total > 12      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 178.5
(-1.4)
P 		213.6
(-0.8)
P 		86.1
(-3)
P 		427.1
(3)
P 		341
B 183.5
(-0.6)
P 		130.1
(-2.3)
P 		106.8
(-3)
P 		299.5
(3)
P 		193
C 179.2
(-1.6)
P 		116
(-3)
P 		143.9
(-2.4)
P 		388.8
(3)
P 		273
avr 180.4
(-1.4) 		153.2
(-2.1) 		112.3
(-3) 		371.8
(3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 250.9
(1.5)
P 		229.8
(0.7)
P 		288.3
(3)
P 		166.3
(-1.8)
P 		183.8
(-1.1)
P 		134.4
(-3)
P 		154
B 228.6
(-0.7)
P 		356.8
(3)
P 		293.2
(1.2)
P 		188.2
(-1.8)
P 		241.7
(-0.3)
P 		146.2
(-3)
P 		211
C 193
(-2.1)
P 		327.6
(3)
P 		180.9
(-2.5)
P 		190.7
(-2.1)
P 		178.4
(-2.6)
P 		167.8
(-3)
P 		160
avr 224.2
(-0.1) 		304.7
(3) 		254.1
(1) 		181.7
(-1.8) 		201.3
(-1) 		149.5
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 65
(3)
P 		46.4
(0.4)
P 		22.5
(-3)
P 		62.5
(2.6)
P 		43
B 58.5
(2.2)
P 		32.1
(-1.9)
P 		24.7
(-3)
P 		63.8
(3)
P 		39
C 59.3
(1.8)
P 		33.4
(-3)
P 		50.1
(0.1)
P 		65.6
(3)
P 		32
avr 60.9
(2.4) 		37.3
(-2.1) 		32.4
(-3) 		64
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 46.3
(-1.3)
P 		81.7
(3)
P 		62.8
(0.7)
P 		42.2
(-1.8)
P 		55.5
(-0.2)
P 		32.7
(-3)
P 		49
B 79.5
(-0.4)
P 		118.8
(3)
P 		71.2
(-1.1)
P 		49.9
(-3)
P 		98.2
(1.2)
P 		54.5
(-2.6)
P 		69
C 71.5
(0.2)
P 		99.9
(3)
P 		46
(-2.3)
P 		38.3
(-3)
P 		57.7
(-1.1)
P 		56.2
(-1.3)
P 		62
avr 65.8
(-0.6) 		100.1
(3) 		60
(-1.3) 		43.5
(-3) 		70.5
(-0.1) 		47.8
(-2.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184541_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10239
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.6 NCBI
Target Description Y67A10A.6 /REP_DB=WormBase Gene ID /WP=CE24567 /TR=Q9U1V3 /GB=CAB60447.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070342 NCBI Caenorhabditis elegans Suppressor of Stomatin mutant Uncoordination family member (ssu-2) (ssu-2) mRNA, complete cds. 11/11 None
GENEFINDER00000008022 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14361230:14368626:1 11/11 None
Y67A10A.6 ENSEMBL cdna:known chromosome:CEL140:IV:14361230:14368626:1 gene:Y67A10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14361235-14368632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ssu-2
Ensembl Y67A10A.6
Entrez Gene 178379 Entrez gene
SwissProt Q9U1V3 EMBL-EBI
WormBase CE24567 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60447 Hypothetical protein Y67A10A.6 [Caenorhabditis elegans] ref|NP_502743.1| Suppressor of Stomatin mutant Uncoordination family member (ssu-2) [Caenorhabditis elegans] 0.0
blast CAE73996 Hypothetical protein CBG21630 [Caenorhabditis briggsae] 0.0
blast XP_790059 PREDICTED: similar to fls485 [Strongylocentrotus purpuratus] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:184541_S_AT
ggaatcggaactcatgatctttgttatatgtgtcatgggcggggaatcaaagagtgccat
cattgtaaaggaggcggcaagaaaccgtgtacttcgtgctctggaactgggtctgttagg
aattatacgaggatcaaggtttatttcaaaaatgaaaaatcggagcactacacggaaagt
gagattccagaaaaattactgtttcaagcggaaggtaaacggatattcgaggaggagcaa
gactatataattccaatttcacaatatcaagaagaagatgtgaacaaaatgtcaaaacta
ttctgtgcgcagcatcttcaaaaatgtatgggagtgtgccgagtgataaggcaacgccac
tatatgaacgcgattccaatcagcaaagttcacttctcattaggcggtgaaaaggggatt
ttctatgtgtatggtacacagaaactatgctattttccgaatttcccatcgaaatgtctc
gcagaccgtaactatgcacatcttcagttaaaaaaatcgttctgtttcagtataaattta
tattccaacaaatatcttactgctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCGGAACTCATGATCTTTGTT 245 533 733 Antisense
CAAGAAACCGTGTACTTCGTGCTCT 166 185 810 Antisense
GTGCTCTGGAACTGGGTCTGTTAGG 82 479 828 Antisense
AACTATTCTGTGCGCAGCATCTTCA 638 139 1028 Antisense
AACGCCACTATATGAACGCGATTCC 582 145 1085 Antisense
GCGATTCCAATCAGCAAAGTTCACT 468 289 1102 Antisense
CAAAGTTCACTTCTCATTAGGCGGT 418 137 1116 Antisense
TATGCTATTTTCCGAATTTCCCATC 583 657 1178 Antisense
TTCCCATCGAAATGTCTCGCAGACC 540 695 1195 Antisense
GCAGACCGTAACTATGCACATCTTC 540 311 1213 Antisense
TCCAACAAATATCTTACTGCTCAAT 694 587 1276 Antisense
Sequence Source Affymetrix Proprietary Database