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[184540_at]

Description Y73F8A.19 /REP_DB=WormBase Gene ID /WP=CE22989 /TR=Q9NA53 /GB=CAB60545.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_total > 07      4grp_total > 38      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 337.5
(3)
P 		126.2
(-2.5)
P 		107.5
(-3)
P 		186.8
(-0.9)
P 		230
B 244.1
(3)
P 		174.8
(0.8)
P 		54.7
(-3)
P 		141.4
(-0.3)
P 		189
C 264.3
(3)
P 		177.9
(-0.7)
P 		123.8
(-3)
P 		148
(-2)
P 		141
avr 282
(3) 		159.6
(-0.9) 		95.3
(-3) 		158.7
(-1) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 229.9
(3)
P 		161.4
(-0.1)
P 		95.4
(-3)
P 		139.8
(-1)
P 		117.5
(-2)
P 		114.4
(-2.2)
P 		135
B 231.2
(3)
P 		140
(-0.9)
P 		105
(-2.4)
P 		112.2
(-2.1)
P 		91.4
(-3)
P 		92.8
(-2.9)
P 		140
C 397.4
(3)
P 		172.2
(-1.6)
P 		166.3
(-1.7)
P 		100.5
(-3)
M 		131.9
(-2.4)
P 		103.6
(-2.9)
P 		297
avr 286.2
(3) 		157.9
(-1.2) 		122.2
(-2.4) 		117.5
(-2.5) 		113.6
(-2.7) 		103.6
(-3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 122.9
(3)
P 		27.4
(-3)
P 		28.1
(-2.9)
P 		27.3
(-3)
P 		96
B 77.9
(3)
P 		43.2
(-0.2)
P 		12.7
(-3)
P 		30.1
(-1.4)
P 		65
C 87.5
(3)
P 		51.2
(-0.5)
P 		43.2
(-1.3)
P 		25
(-3)
P 		63
avr 96.1
(3) 		40.6
(-1.9) 		28
(-3) 		27.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 42.4
(0.5)
P 		57.4
(3)
P 		20.8
(-3)
P 		35.5
(-0.6)
P 		35.5
(-0.6)
P 		27.8
(-1.9)
P 		37
B 80.4
(3)
P 		46.6
(-0.7)
P 		25.5
(-3)
P 		29.7
(-2.5)
P 		37.2
(-1.7)
P 		34.6
(-2)
P 		55
C 147.3
(3)
P 		52.6
(-1.5)
P 		42.3
(-2)
P 		20.2
(-3)
M 		42.7
(-1.9)
P 		34.7
(-2.3)
P 		127
avr 90
(3) 		52.2
(-0.7) 		29.5
(-2.9) 		28.5
(-3) 		38.5
(-2) 		32.4
(-2.6) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9281
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.19 NCBI
Target Description Y73F8A.19 /REP_DB=WormBase Gene ID /WP=CE22989 /TR=Q9NA53 /GB=CAB60545.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070453 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-64) (tag-64) mRNA, complete cds. 11/11 None
SNAP00000030822 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15361562:15367955:1 11/11 None
GENEFINDER00000030902 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15361556:15367955:1 11/11 None
Y73F8A.19 ENSEMBL cdna:known chromosome:CEL140:IV:15361556:15368187:1 gene:Y73F8A.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15361561-15367961(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-64
Ensembl Y73F8A.19
Entrez Gene 190681 Entrez gene
SwissProt Q9NA53 EMBL-EBI
WormBase CE32997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60545 Hypothetical protein Y73F8A.19 [Caenorhabditis elegans] ref|NP_502854.2| Temporarily Assigned Gene name family member (tag-64) [Caenorhabditis elegans] 0.0
blast CAE67475 Hypothetical protein CBG12979 [Caenorhabditis briggsae] 2.0E-44
blast AAN60539 Hypothetical protein B0495.10c [Caenorhabditis elegans] ref|NP_871898.1| B0495.10c [Caenorhabditis elegans] 2.0E-42
blast CAE67475 Hypothetical protein CBG12979 [Caenorhabditis briggsae] 5.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR010734 EMBL-EBI Copine 1.0E-63
Pfam IPR010734 EMBL-EBI Copine 1.0E-63
Pfam IPR010734 EMBL-EBI Copine 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:184540_AT
atccactgtcaggagccaagttttcacagattatatatcatttggcgaaacaagcccaaa
acaacttcaaccgagccaatgagccacccagttactacgtgctctttataattacacgtg
gaagtattgaggatctcaaggaaactgtacaggcggctatttttgcatcgaaagctccaa
tttctatagtttttgttggtgtcggctgtgaaggtttggatgagattgaacgaatgggaa
atgcgggaaaacgattagagtatcagggacggaaaagtgaacgcgataatttacagtttg
taaacgccacaaaaacacgtctagaatgtgacaactacagtgacatgaccaatgctttct
tggaaaaagcacttcaacagatcccatggcaatgctccacattttacatgcaaaatcacg
tgcttcccggaaagtcggctgaagagaataactcatcgggaagtctaatggtaccgagca
gtagtcggaggccaagttctgcttatggacaacagggagatgaggaagatgttcgaatga
gcacaagtaatagtgctgaacagactagcagccgccgaagccgattatcgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCACTGTCAGGAGCCAAGTTTTC 353 39 1298 Antisense
GCCCAAAACAACTTCAACCGAGCCA 133 283 1351 Antisense
TGAGCCACCCAGTTACTACGTGCTC 693 569 1377 Antisense
GTACAGGCGGCTATTTTTGCATCGA 246 461 1444 Antisense
GTTGGTGTCGGCTGTGAAGGTTTGG 60 435 1492 Antisense
TCAACAGATCCCATGGCAATGCTCC 604 629 1671 Antisense
GGCAATGCTCCACATTTTACATGCA 227 535 1685 Antisense
AATCACGTGCTTCCCGGAAAGTCGG 673 169 1711 Antisense
GTAGTCGGAGGCCAAGTTCTGCTTA 696 455 1778 Antisense
GCTGAACAGACTAGCAGCCGCCGAA 125 297 1852 Antisense
AGCCGCCGAAGCCGATTATCGAATG 373 83 1867 Antisense
Sequence Source Affymetrix Proprietary Database