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[184539_at]

Description C40A11.1 /REP_DB=WormBase Gene ID /WP=CE19364 /TR=Q9TZA4 /GB=AAC68759.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 52      6grp_total > 62      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 57.1
(2.3)
M 		61.4
(2.8)
A 		63.3
(3)
A 		7.2
(-3)
A 		56
B 86.4
(3)
A 		50.1
(-0.1)
A 		46.8
(-0.4)
A 		16.6
(-3)
A 		70
C 67.1
(3)
P 		67.3
(3)
P 		63.2
(2.5)
M 		13.7
(-3)
A 		54
avr 70.2
(3) 		59.6
(1.9) 		57.8
(1.7) 		12.5
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 82.9
(-1.2)
M 		131.9
(0.5)
P 		206.3
(3)
P 		145.8
(1)
P 		112.3
(-0.2)
P 		28.6
(-3)
A 		178
B 80.8
(-2.7)
P 		139.1
(-0.2)
P 		214.1
(3)
P 		140
(-0.2)
P 		89
(-2.3)
P 		73.7
(-3)
P 		140
C 53.5
(-2.3)
A 		150.6
(2.4)
P 		126.8
(1.2)
P 		163.5
(3)
P 		39.7
(-3)
M 		74.9
(-1.3)
P 		124
avr 72.4
(-2.4) 		140.5
(1) 		182.4
(3) 		149.8
(1.4) 		80.3
(-2) 		59.1
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 20.8
(3)
M 		13.3
(0.7)
A 		16.5
(1.7)
A 		1.1
(-3)
A 		20
B 27.5
(3)
A 		12.4
(-0.8)
A 		10.8
(-1.2)
A 		3.5
(-3)
A 		24
C 22.2
(3)
P 		19.3
(2.1)
P 		22
(2.9)
M 		2.3
(-3)
A 		20
avr 23.5
(3) 		15
(0.6) 		16.4
(1) 		2.3
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 15.3
(-1.8)
M 		46.9
(3)
P 		44.9
(2.7)
P 		37
(1.5)
P 		33.9
(1)
P 		7
(-3)
A 		40
B 28.1
(-2.9)
P 		46.3
(1.6)
P 		52
(3)
P 		37.1
(-0.6)
P 		36.2
(-0.9)
P 		27.5
(-3)
P 		25
C 19.8
(-1.7)
A 		46
(3)
P 		32.3
(0.5)
P 		32.9
(0.6)
P 		12.8
(-3)
M 		25.1
(-0.8)
P 		33
avr 21.1
(-2.7) 		46.4
(3) 		43.1
(2.3) 		35.7
(0.6) 		27.6
(-1.3) 		19.9
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4548
Sequence Type Exemplar sequence
Representative Public ID C40A11.1 NCBI
Target Description C40A11.1 /REP_DB=WormBase Gene ID /WP=CE19364 /TR=Q9TZA4 /GB=AAC68759.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061800 NCBI Caenorhabditis elegans C40A11.1 (C40A11.1) mRNA, complete cds. 11/11 None
SNAP00000005082 ENSEMBL cdna:SNAP chromosome:CEL140:II:2154282:2155241:1 11/11 None
C40A11.1 ENSEMBL cdna:known chromosome:CEL140:II:2154013:2155241:1 gene:C40A11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005085 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2154011-2155240(+) 98.03 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.1
Entrez Gene 183351 Entrez gene
SwissProt Q9TZA4 EMBL-EBI
WormBase CE19364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68759 Hypothetical protein C40A11.1 [Caenorhabditis elegans] ref|NP_494201.1| C40A11.1 [Caenorhabditis elegans] 1.0E-178
blast AAC68759 Hypothetical protein C40A11.1 [Caenorhabditis elegans] ref|NP_494201.1| C40A11.1 [Caenorhabditis elegans] 1.0E-133
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-80
blast AAC26266 Hypothetical protein C40D2.3 [Caenorhabditis elegans] ref|NP_494145.1| C40D2.3 [Caenorhabditis elegans] 2.0E-74
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-60
blast AAC26266 Hypothetical protein C40D2.3 [Caenorhabditis elegans] ref|NP_494145.1| C40D2.3 [Caenorhabditis elegans] 5.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.6E-15
Pfam IPR002083 EMBL-EBI MATH 3.5E-31
Pfam IPR002083 EMBL-EBI MATH 7.4E-8
Pfam IPR002083 EMBL-EBI MATH 1.2E-41
Pfam IPR002083 EMBL-EBI MATH 3.5E-31
Pfam IPR002083 EMBL-EBI MATH 7.4E-8
Sequence
Target Sequence 
>C. ELEGANS:184539_AT
gtattctgattgaagctcatgccaatattattaacatgacagacactccgacctggcaac
ctaacataggaaaatcatttgttctaaaacatactttcggaaatatatcgagatttgtgc
gcggagagcaggtttatagtgatatagaagagcattacaatataccatggagaatcacaa
tatcaaagtgtcatgaacgtcttgggatatatttgtattgtaaaaaagctgtttgtgaag
gaaagaaatatgaagttaaatgtgaatttgaagttcaattaatttcttcaagtggcaaat
gtgatgcaggacgtcgatcagttgttttcgatcagccttatggccgtggtatgacattaa
ttagttgggaaaaaatgaaaaaatactacgttgacaacgacagtattaatgtggaagtca
ttgtaaatattattgatatcaaagaatcatcatgcattatgtcgaatacggggaaaaaat
ttgtattatcctatgctgttgagaacatatctagtattaaggaaggagggaactattcca
caggcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCTGATTGAAGCTCATGCCAA 213 453 368 Antisense
ATTAACATGACAGACACTCCGACCT 267 13 397 Antisense
TCCGACCTGGCAACCTAACATAGGA 67 595 414 Antisense
ATATCGAGATTTGTGCGCGGAGAGC 288 21 472 Antisense
AGTGTCATGAACGTCTTGGGATATA 390 59 554 Antisense
GATGCAGGACGTCGATCAGTTGTTT 353 413 670 Antisense
TCAGTTGTTTTCGATCAGCCTTATG 656 621 685 Antisense
CAGCCTTATGGCCGTGGTATGACAT 289 201 700 Antisense
GAATCATCATGCATTATGTCGAATA 165 327 811 Antisense
AAATTTGTATTATCCTATGCTGTTG 224 117 844 Antisense
GGAGGGAACTATTCCACAGGCATTG 702 515 892 Antisense
Sequence Source Affymetrix Proprietary Database