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[184537_at]

Description Y49E10.10 /REP_DB=WormBase Gene ID /WP=CE22227 /TR=Q9XTT6 /GB=CAB11562.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 69.4
(-2.4)
A 		107.7
(2.8)
M 		65
(-3)
A 		109.2
(3)
P 		44
B 17
(-3)
A 		109.2
(3)
A 		50.9
(-0.8)
A 		60.2
(-0.2)
A 		92
C 73.8
(-0.9)
A 		102.6
(1.6)
A 		50.5
(-3)
A 		118.6
(3)
P 		68
avr 53.4
(-3) 		106.5
(3) 		55.5
(-2.8) 		96
(1.8) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 79.7
(-1.6)
A 		56.9
(-2.7)
A 		51.8
(-3)
A 		109.2
(-0.1)
M 		135.3
(1.2)
P 		170.4
(3)
P 		119
B 51.6
(-1.3)
A 		68.4
(-0.4)
A 		18.2
(-3)
A 		54.8
(-1.1)
A 		108.3
(1.6)
P 		135.2
(3)
P 		117
C 51.9
(-3)
A 		56.8
(-2.8)
A 		52.1
(-3)
A 		64.2
(-2.6)
A 		122
(-0.6)
P 		226.5
(3)
P 		175
avr 61.1
(-2.1) 		60.7
(-2.1) 		40.7
(-3) 		76.1
(-1.4) 		121.9
(0.6) 		177.4
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.3
(3)
A 		23.4
(1.8)
M 		17
(-2.4)
A 		16
(-3)
P 		9
B 5.4
(-3)
A 		27
(3)
A 		11.8
(-1.2)
A 		12.8
(-0.9)
A 		22
C 24.4
(0.4)
A 		29.5
(3)
A 		17.6
(-3)
A 		20
(-1.8)
P 		12
avr 18.4
(-1.4) 		26.6
(3) 		15.5
(-3) 		16.3
(-2.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 14.7
(-2.3)
A 		20.2
(-1.2)
A 		11.3
(-3)
A 		27.7
(0.3)
M 		40.8
(2.9)
P 		41.5
(3)
P 		30
B 18
(-1.2)
A 		22.8
(-0.6)
A 		4.4
(-3)
A 		14.5
(-1.7)
A 		44
(2.2)
P 		50.4
(3)
P 		46
C 19.2
(-2.4)
A 		17.3
(-2.6)
A 		13.3
(-3)
A 		12.9
(-3)
A 		39.5
(-0.5)
P 		75.8
(3)
P 		63
avr 17.3
(-2) 		20.1
(-1.6) 		9.7
(-3) 		18.4
(-1.9) 		41.4
(1.1) 		55.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7334
Sequence Type Exemplar sequence
Representative Public ID Y49E10.10 NCBI
Target Description Y49E10.10 /REP_DB=WormBase Gene ID /WP=CE22227 /TR=Q9XTT6 /GB=CAB11562.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067216 NCBI Caenorhabditis elegans Y49E10.10 (Y49E10.10) mRNA, complete cds. 11/11 None
GENEFINDER00000016103 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12395484:12398858:1 11/11 None
Y49E10.10.1 ENSEMBL cdna:known chromosome:CEL140:III:12395410:12398858:1 gene:Y49E10.10 11/11 None
Y49E10.10.2 ENSEMBL cdna:known chromosome:CEL140:III:12395895:12398858:1 gene:Y49E10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016079 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12395479-12398854(+) 91.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49E10.10
Entrez Gene 176665 Entrez gene
SwissProt Q9XTT6 EMBL-EBI
WormBase CE32980 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640806_AT dm
DROSGENOME1:147409_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB11562 Hypothetical protein Y49E10.10 [Caenorhabditis elegans] ref|NP_499617.2| Y49E10.10 [Caenorhabditis elegans] 6.0E-55
blast CAB11562 Hypothetical protein Y49E10.10 [Caenorhabditis elegans] ref|NP_499617.2| Y49E10.10 [Caenorhabditis elegans] 7.0E-55
Sequence
Target Sequence 
>C. ELEGANS:184537_AT
tacagtagcaccagtacctaagccggctccagttaccgccccagctccaaatccgcctgc
acctgaaaatacgactgcaaaagtggagacaactaagccaacaaaagctgcgccgcctgc
gccgaccccggtgcctaacccggtgccgagcccgcctccgcctcctgcaaacacaactgt
aaccgaggagaagactacagtaccaccagctacagatgaaccagcaccgaaaactgttgc
cacaactgagaatccgaaaccaatagacaattctactccccaaaaaccacccaatccacc
agtgccaattgttgaaaatacgacaaaagctccagggactggcaaaattgccagcaatca
cactgaagaaggcccaaaggatctaggttctggtactccagatgctcaagcccagaatgg
aacaaagtcagcggaacagttgaaggaagaggagattaacaaaaagaaattcgtttacga
gttgtcagcgtgctccggactcatcattgtcagtgttgccggctacgtggcatcgttctt
ggcacatgatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTAGCACCAGTACCTAAGCCG 85 641 816 Antisense
AATCCGCCTGCACCTGAAAATACGA 569 165 865 Antisense
GCCTCCTGCAAACACAACTGTAACC 131 283 975 Antisense
GAACCAGCACCGAAAACTGTTGCCA 573 345 1033 Antisense
CCCAATCCACCAGTGCCAATTGTTG 485 257 1105 Antisense
AAGGATCTAGGTTCTGGTACTCCAG 276 161 1192 Antisense
TACTCCAGATGCTCAAGCCCAGAAT 79 645 1209 Antisense
GTTTACGAGTTGTCAGCGTGCTCCG 349 447 1288 Antisense
TGCTCCGGACTCATCATTGTCAGTG 458 581 1306 Antisense
TGTCAGTGTTGCCGGCTACGTGGCA 142 555 1323 Antisense
TGGCATCGTTCTTGGCACATGATTA 323 545 1343 Antisense
Sequence Source Affymetrix Proprietary Database