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[184536_at]

Description F54D12.2 /REP_DB=WormBase Gene ID /WP=CE17867 /TR=O44834 /GB=AAB94993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3
(-2.6)
A 		4.3
(-1.1)
A 		7.8
(3)
A 		2.7
(-3)
A 		5
B 8.5
(-1.5)
A 		27.7
(3)
A 		2.3
(-3)
A 		6.1
(-2.1)
A 		25
C 1.7
(-3)
A 		27.7
(3)
A 		3.4
(-2.6)
A 		17.7
(0.7)
A 		26
avr 4.4
(-3) 		19.9
(3) 		4.5
(-3) 		8.8
(-1.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5
(-2.3)
A 		3.9
(-3)
A 		7.6
(-0.7)
A 		4.7
(-2.5)
A 		13.6
(3)
A 		9.7
(0.6)
A 		10
B 4.5
(-1.8)
A 		3.9
(-2.3)
A 		7.3
(0.5)
A 		10.4
(3)
A 		6.3
(-0.3)
A 		3
(-3)
A 		7
C 1.3
(-2.9)
A 		1.1
(-3)
A 		6.4
(0)
A 		6.4
(0)
A 		11.7
(3)
A 		2.5
(-2.2)
A 		11
avr 3.6
(-2.5) 		3
(-3) 		7.1
(0.3) 		7.2
(0.4) 		10.5
(3) 		5.1
(-1.3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-0.4)
A 		0.9
(-1.1)
A 		2
(3)
A 		0.4
(-3)
A 		2
B 2.7
(-0.9)
A 		6.8
(3)
A 		0.5
(-3)
A 		1.3
(-2.2)
A 		6
C 0.6
(-3)
A 		8
(3)
A 		1.2
(-2.5)
A 		3
(-1.1)
A 		7
avr 1.5
(-2.6) 		5.2
(3) 		1.2
(-3) 		1.6
(-2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.4
(-2.1)
A 		1.7
(-1.5)
A 		1.2
(-2.4)
A 		4.1
(3)
A 		2.4
(-0.2)
A 		3
B 1.6
(-1.2)
A 		1.3
(-2.3)
A 		1.8
(-0.5)
A 		2.8
(3)
A 		2.6
(2.3)
A 		1.1
(-3)
A 		2
C 0.5
(-2.7)
A 		0.3
(-3)
A 		1.6
(-0.8)
A 		1.3
(-1.3)
A 		3.8
(3)
A 		0.8
(-2.1)
A 		4
avr 1
(-3) 		1
(-3) 		1.7
(-1.3) 		1.8
(-1.1) 		3.5
(3) 		1.4
(-2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4273
Sequence Type Exemplar sequence
Representative Public ID F54D12.2 NCBI
Target Description F54D12.2 /REP_DB=WormBase Gene ID /WP=CE17867 /TR=O44834 /GB=AAB94993.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061561 NCBI Caenorhabditis elegans F54D12.2 (F54D12.2) mRNA, complete cds. 11/11 None
F54D12.2 ENSEMBL cdna:known chromosome:CEL140:II:1399571:1400036:1 gene:F54D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1399569-1400035(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D12.2
Entrez Gene 186239 Entrez gene
SwissProt O44834 EMBL-EBI
WormBase CE17867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94993 Hypothetical protein F54D12.2 [Caenorhabditis elegans] ref|NP_493962.1| F54D12.2 [Caenorhabditis elegans] 6.0E-46
blast CAE62970 Hypothetical protein CBG07187 [Caenorhabditis briggsae] 2.0E-12
blast AAR30205 Hypothetical protein F54D12.7 [Caenorhabditis elegans] ref|NP_493959.2| F54D12.7 [Caenorhabditis elegans] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184536_AT
cttcatcgctatgccggaaacacgaactgtaatagccccgccaaacattaaatcatggac
ggactgcatgttcgcatgctatttgaatacaaattgtatggcggcttttatgacgggata
tcctaattgtcgaaatgtcatgtatgggaatgttacctcgtggatcaaacttcttgcaaa
gcttcctaaaagcaaatcactcttgaactatatagcggtgaagtacgtttacgacaaagt
atcatgtttgaaaaactttgcgtcgttgtttacttcatctacattatatacccaatcaac
tgatcaatactcttcatatcagacaacgacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCATCGCTATGCCGGAAACACGA 587 221 21 Antisense
GAAACACGAACTGTAATAGCCCCGC 328 335 37 Antisense
ATAGCCCCGCCAAACATTAAATCAT 359 23 52 Antisense
ATGGACGGACTGCATGTTCGCATGC 94 53 75 Antisense
GTATGGCGGCTTTTATGACGGGATA 50 455 116 Antisense
GGGAATGTTACCTCGTGGATCAAAC 547 493 166 Antisense
GATCAAACTTCTTGCAAAGCTTCCT 403 421 183 Antisense
AATCACTCTTGAACTATATAGCGGT 307 171 215 Antisense
TTGCGTCGTTGTTTACTTCATCTAC 370 703 278 Antisense
CAATCAACTGATCAATACTCTTCAT 481 181 313 Antisense
TACTCTTCATATCAGACAACGACCT 691 643 328 Antisense
Sequence Source Affymetrix Proprietary Database