[Home] | [Total List]

[184535_s_at]

Description T23B12.4 /REP_DB=WormBase Gene ID /WP=CE14032 /TR=O17003 /GB=AAB69936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 48      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 391.9
(3)
P 		332.7
(-1.5)
P 		333.9
(-1.4)
P 		312.4
(-3)
P 		80
B 381.7
(3)
P 		294.1
(-1.9)
P 		313.6
(-0.8)
P 		275.4
(-3)
P 		106
C 400.4
(3)
P 		298.8
(-1.3)
P 		358.4
(1.2)
P 		257.1
(-3)
P 		143
avr 391.3
(3) 		308.5
(-1.5) 		335.3
(-0.1) 		281.6
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 364.3
(-1.3)
P 		417.4
(1.2)
P 		378.9
(-0.6)
P 		328.7
(-3)
P 		358.1
(-1.6)
P 		454.3
(3)
P 		126
B 435.2
(0.7)
P 		376.4
(-1.2)
P 		346.6
(-2.2)
P 		323.3
(-3)
P 		382.6
(-1)
P 		503
(3)
P 		180
C 548.2
(3)
P 		363.5
(-0.8)
P 		305.7
(-2)
P 		256.9
(-3)
P 		409.3
(0.1)
P 		435.9
(0.7)
P 		291
avr 449.2
(2.4) 		385.8
(0.1) 		343.7
(-1.5) 		303
(-3) 		383.3
(-0) 		464.4
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 142.7
(3)
P 		72.2
(-1.4)
P 		87.3
(-0.4)
P 		45.7
(-3)
P 		97
B 121.7
(3)
P 		72.6
(-1.7)
P 		72.7
(-1.7)
P 		58.7
(-3)
P 		63
C 132.6
(3)
P 		85.9
(-0.1)
P 		124.9
(2.5)
P 		43.4
(-3)
P 		89
avr 132.3
(3) 		76.9
(-1) 		95
(0.3) 		49.3
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 67.2
(-3)
P 		148.5
(3)
P 		82.5
(-1.9)
P 		83.4
(-1.8)
P 		108.1
(0)
P 		110.6
(0.2)
P 		81
B 151.4
(0.9)
P 		125.3
(-0.6)
P 		84.2
(-3)
P 		85.6
(-2.9)
P 		155.5
(1.1)
P 		187.6
(3)
P 		103
C 203.2
(3)
P 		110.9
(-0.7)
P 		77.8
(-2)
P 		51.7
(-3)
P 		132.5
(0.2)
P 		145.9
(0.7)
P 		152
avr 140.6
(2.4) 		128.2
(1.4) 		81.5
(-2.4) 		73.6
(-3) 		132
(1.7) 		148
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11619
Sequence Type Exemplar sequence
Representative Public ID T23B12.4 NCBI
Target Description T23B12.4 /REP_DB=WormBase Gene ID /WP=CE14032 /TR=O17003 /GB=AAB69936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072778(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072778 NCBI Caenorhabditis elegans T23B12.4 (T23B12.4) mRNA, complete cds. 9/11 B 
SNAP00000042001 ENSEMBL cdna:SNAP chromosome:CEL140:V:8464989:8467810:1 11/11 None
GENEFINDER00000042015 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8464989:8467810:1 9/11 None
T23B12.4 ENSEMBL cdna:known chromosome:CEL140:V:8464948:8468134:1 gene:T23B12.4 9/11 B 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8464989-8467811(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B12.4
Entrez Gene 179228 Entrez gene
SwissProt O17003 EMBL-EBI
WormBase CE29351 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15914_AT natC N(alpha)-terminal acetyltransferase, Mak10 subunit family protein at
ATH1-121501:265398_AT natC N(alpha)-terminal acetyltransferase, Mak10 subunit family protein at
CANINE:1597869_AT similar to corneal wound healing-related protein cfa
CANINE:1588666_AT similar to corneal wound healing-related protein cfa
CANINE_2:CFA.8291.1.S1_S_AT similar to corneal wound healing-related protein cfa
CANINE_2:CFA.9780.1.A1_AT similar to corneal wound healing-related protein cfa
CANINE_2:CFAAFFX.2910.1.S1_AT similar to corneal wound healing-related protein cfa
DROSOPHILA_2:1640055_AT dm
DROSGENOME1:153245_AT dm
CHICKEN:GGAAFFX.7995.2.S1_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) gga
CHICKEN:GGAAFFX.7995.2.S1_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) gga
HG-U133_PLUS_2:219362_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133A:219362_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133A_2:219362_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133_PLUS_2:220925_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133A:220925_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133A_2:220925_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HU35KSUBC:RC_AA290566_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
U133_X3P:G13375865_3P_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
U133_X3P:G11345463_3P_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95B:45226_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95B:45227_R_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95B:46994_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95D:83194_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95E:91259_I_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
U133_X3P:HS2.407433.1.S1_3P_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
U133_X3P:HS2.269158.1.S1_3P_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133_PLUS_2:1559508_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133_PLUS_2:1565927_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133_PLUS_2:1565928_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U133_PLUS_2:1565929_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95D:81280_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
HG-U95D:83373_R_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
U133_X3P:HS2.407433.1.A1_3P_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) hs
MOUSE430_2:1444116_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430B:1444116_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MG-U74AV2:97478_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430A:1454657_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430A_2:1454657_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430_2:1454657_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430A:1433570_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430A_2:1433570_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430_2:1433570_S_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430A:1460544_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430A_2:1460544_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430_2:1460544_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430B:1453263_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430_2:1453263_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430B:1429720_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOUSE430_2:1429720_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) mm
MOE430B:1445410_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) (Mak10), mRNA mm
MOUSE430_2:1445410_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) (Mak10), mRNA mm
MU19KSUBB:TC30817_AT MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) (Mak10), mRNA mm
RG-U34B:RC_AA851658_AT corneal wound healing related protein rn
RG-U34B:RC_AA851658_G_AT corneal wound healing related protein rn
RG-U34C:RC_AI180418_AT corneal wound healing related protein rn
RG-U34C:RC_AA819860_AT corneal wound healing related protein rn
RAE230A:1398804_AT corneal wound healing related protein rn
RAT230_2:1398804_AT corneal wound healing related protein rn
Protein Similarities
Method ID Description E-Value
blast AAB69936 Hypothetical protein T23B12.4 [Caenorhabditis elegans] ref|NP_505179.1| T23B12.4 [Caenorhabditis elegans] 0.0
blast CAE58391 Hypothetical protein CBG01520 [Caenorhabditis briggsae] 0.0
blast NP_001026623 corneal wound healing-related protein [Gallus gallus] emb|CAG32691.1| hypothetical protein [Gallus gallus] 6.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007244 EMBL-EBI Mak10 subunit, NatC N(alpha)-terminal acetyltransferase 1.2E-14
Sequence
Target Sequence 
>C. ELEGANS:184535_S_AT
gagttgaaacgtcgtgtcgctgctcatcaattcagtgttctcaatcaaatcgcaatttca
atgatttctgatggagttgtgagactgacagttgttctgattcgtaaaggaatcatcaag
atgccgaagggtggagatgatgctgaaaaactaagattcgaaagacgattcgaaccattc
gactcacttgggcctccagttcgtgtggattacgaacgttttaaaagtgattcgggaatt
gaccaaatgtatgaagacaagattgagacactgatcgatcaagctcagaaaagtttcaat
gaagcacgtgaacatctcgaaaaaatcgataactctgtggagcaaaatcgcgaaatgatg
ttggttgatgctgtttggtcgtttaaaaatcttcttatttccaggcaattgatccacgtg
gcgaaatcgaacattattgcttgcagagttctgaaacttgatttgacggacagaaatgtc
gtttggtcgttttcagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGAAACGTCGTGTCGCTGCTC 63 399 1918 Antisense
GTCGCTGCTCATCAATTCAGTGTTC 400 475 1933 Antisense
TTCAGTGTTCTCAATCAAATCGCAA 426 687 1948 Antisense
GAGACTGACAGTTGTTCTGATTCGT 604 393 1998 Antisense
TTCGAACCATTCGACTCACTTGGGC 456 695 2086 Antisense
GGCCTCCAGTTCGTGTGGATTACGA 201 541 2108 Antisense
GAGACACTGATCGATCAAGCTCAGA 288 393 2182 Antisense
GAAGCACGTGAACATCTCGAAAAAA 339 341 2218 Antisense
TGGTTGATGCTGTTTGGTCGTTTAA 117 549 2279 Antisense
TCCAGGCAATTGATCCACGTGGCGA 452 587 2317 Antisense
AATGTCGTTTGGTCGTTTTCAGAAG 40 165 2392 Antisense
Sequence Source Affymetrix Proprietary Database