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[184534_s_at]

Description C17H12.8 /REP_DB=WormBase Gene ID /WP=CE19360 /TR=O45078 /GB=AAD34648.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_high_8_8 > 60      6grp_highest_nonorm > 63      6grp_total > 63      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1440
1 2 3 4 range
A 802.5
(1.1)
P 		949.2
(1.9)
P 		1155.3
(3)
P 		24.8
(-3)
A 		1131
B 750.7
(0.5)
P 		818.7
(0.9)
P 		1239.8
(3)
P 		42.7
(-3)
P 		1197
C 788.3
(0.2)
P 		834.6
(0.4)
P 		1465.1
(3)
P 		29.2
(-3)
A 		1436
avr 780.5
(0.6) 		867.5
(1) 		1286.7
(3) 		32.2
(-3) 		1255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1050
1 2 3 4 5 6 range
A 210.7
(-3)
P 		361.2
(-2)
P 		1130.8
(3)
P 		1009
(2.2)
P 		465.2
(-1.3)
P 		504.7
(-1.1)
P 		920
B 345.2
(-3)
P 		368.4
(-2.8)
P 		1261.1
(3)
P 		930.8
(0.8)
P 		506.8
(-1.9)
P 		681.3
(-0.8)
P 		916
C 317.2
(-3)
P 		316.2
(-3)
P 		746
(0.9)
P 		972.4
(3)
P 		562.1
(-0.8)
P 		828.7
(1.7)
P 		656
avr 291
(-3) 		348.6
(-2.5) 		1046
(3) 		970.7
(2.4) 		511.4
(-1.2) 		671.6
(0) 		755
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 292.2
(2.8)
P 		206
(1.1)
P 		302
(3)
P 		3.6
(-3)
A 		298
B 239.4
(2)
P 		202.2
(1.2)
P 		287.3
(3)
P 		9.1
(-3)
P 		278
C 261
(0)
P 		239.9
(-0.2)
P 		510.6
(3)
P 		4.9
(-3)
A 		506
avr 264.2
(1.3) 		216
(0.5) 		366.6
(3) 		5.9
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 38.8
(-3)
P 		128.5
(-0.5)
P 		246.3
(2.7)
P 		255.9
(3)
P 		140.4
(-0.2)
P 		122.9
(-0.7)
P 		217
B 120.1
(-3)
P 		122.6
(-2.9)
P 		306.2
(3)
P 		246.5
(1.1)
P 		205.9
(-0.2)
P 		254.1
(1.3)
P 		186
C 117.6
(-2.3)
P 		96.5
(-3)
P 		189.9
(0.1)
P 		195.6
(0.3)
P 		181.9
(-0.2)
P 		277.4
(3)
P 		181
avr 92.2
(-3) 		115.9
(-2.1) 		247.5
(3) 		232.7
(2.4) 		176.1
(0.2) 		218.1
(1.9) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8955
Sequence Type Exemplar sequence
Representative Public ID C17H12.8 NCBI
Target Description C17H12.8 /REP_DB=WormBase Gene ID /WP=CE19360 /TR=O45078 /GB=AAD34648.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068647 NCBI Caenorhabditis elegans C17H12.8 (C17H12.8) mRNA, complete cds. 11/11 A 
SNAP00000015114 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6818709:6820531:1 11/11 None
GENEFINDER00000015122 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6818709:6820531:1 11/11 None
C17H12.8 ENSEMBL cdna:known chromosome:CEL140:IV:6818590:6820627:1 gene:C17H12.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6818714-6820537(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.8
Entrez Gene 177447 Entrez gene
SwissProt O45078 EMBL-EBI
WormBase CE19360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34648 Hypothetical protein C17H12.8 [Caenorhabditis elegans] ref|NP_501048.1| C17H12.8 [Caenorhabditis elegans] 0.0
blast G88711 protein C17H12.8 [imported] - Caenorhabditis elegans 1.0E-160
blast CAE61747 Hypothetical protein CBG05701 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-23
Sequence
Target Sequence 
>C. ELEGANS:184534_S_AT
actgcattcagtacttatttccaagcaaatcaattggatatggattcaactgttggagat
aaaaagaagaaagcagttactgtcatttcaatggaggatattgttttagtgattgacgtt
cagaagaccaacgaaccaaattgtgtactgagagcagttcaatatcctccaactccatca
tctgaagtatatcttgacttcacagctgtatatgattatccgagaaacatcacccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCATTCAGTACTTATTTCCAAG 155 99 748 Antisense
GTACTTATTTCCAAGCAAATCAATT 41 461 758 Antisense
ATTGTTTTAGTGATTGACGTTCAGA 674 1 847 Antisense
GAAGACCAACGAACCAAATTGTGTA 60 331 870 Antisense
GAACCAAATTGTGTACTGAGAGCAG 410 345 880 Antisense
AGAGCAGTTCAATATCCTCCAACTC 52 71 898 Antisense
TCCAACTCCATCATCTGAAGTATAT 637 587 915 Antisense
ACTCCATCATCTGAAGTATATCTTG 434 99 919 Antisense
GTATATCTTGACTTCACAGCTGTAT 580 453 934 Antisense
CACAGCTGTATATGATTATCCGAGA 505 195 948 Antisense
TGATTATCCGAGAAACATCACCCAC 183 565 960 Antisense
Sequence Source Affymetrix Proprietary Database